miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 3' -53.2 NC_005808.1 + 20492 0.74 0.302538
Target:  5'- cGCGCUGGAAcaguggguuacGGucauucacgccaucGAGCCGCGCGCCGa -3'
miRNA:   3'- uCGUGGCUUU-----------UU--------------UUCGGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 14759 0.69 0.54861
Target:  5'- gAGCAgCGGcgc--GGCCG-GCGCCACc -3'
miRNA:   3'- -UCGUgGCUuuuuuUCGGCgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 13950 0.68 0.621618
Target:  5'- cGGCACCGAucuggcacugcgcggGAAcuGGCCGgccucaucCGCGCC-Cg -3'
miRNA:   3'- -UCGUGGCU---------------UUUuuUCGGC--------GCGCGGuG- -5'
26778 3' -53.2 NC_005808.1 + 4496 0.68 0.605518
Target:  5'- -cCGCCGGAu----GCgCGCgGCGCCACa -3'
miRNA:   3'- ucGUGGCUUuuuuuCG-GCG-CGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 31505 0.69 0.537409
Target:  5'- cGCAgCCGAcAAGGuGCuCGCGCGCgACc -3'
miRNA:   3'- uCGU-GGCUuUUUUuCG-GCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 379 0.72 0.391879
Target:  5'- uGGCcuGCCGAuuGAGcgcGGCCaGCGCGCgACu -3'
miRNA:   3'- -UCG--UGGCUuuUUU---UCGG-CGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 40246 0.75 0.260241
Target:  5'- uGCagGCCGAAuuGcGGCgcaCGCGCGCCACg -3'
miRNA:   3'- uCG--UGGCUUuuUuUCG---GCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 27979 0.75 0.260241
Target:  5'- cGGCGCCGGAAGcaugGAAGCCGaCGCaCUGCu -3'
miRNA:   3'- -UCGUGGCUUUU----UUUCGGC-GCGcGGUG- -5'
26778 3' -53.2 NC_005808.1 + 18371 0.71 0.441023
Target:  5'- -uCAUCGAGAAGAucGGCCGCuCGCCGg -3'
miRNA:   3'- ucGUGGCUUUUUU--UCGGCGcGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 26325 0.7 0.504315
Target:  5'- uAGCcuuCCGGGu---GGCCGCGCGCgAg -3'
miRNA:   3'- -UCGu--GGCUUuuuuUCGGCGCGCGgUg -5'
26778 3' -53.2 NC_005808.1 + 13119 0.7 0.482749
Target:  5'- --gACCGAcgcgGAAcuGGCCGCGCGCUuCg -3'
miRNA:   3'- ucgUGGCU----UUUuuUCGGCGCGCGGuG- -5'
26778 3' -53.2 NC_005808.1 + 38858 0.71 0.408187
Target:  5'- cGGCACCGAcguGcccaccaccggcguGAAcGGCaCGgGCGCCACg -3'
miRNA:   3'- -UCGUGGCU---U--------------UUUuUCG-GCgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 13894 0.72 0.358777
Target:  5'- uGCGCCGAcagcaucgaccuuguGAAcGAcGUgGCGCGCCGCg -3'
miRNA:   3'- uCGUGGCU---------------UUUuUU-CGgCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 31783 0.68 0.582611
Target:  5'- --aGCCGGAAGGAuucAGCCGCGCcgaGgCGCa -3'
miRNA:   3'- ucgUGGCUUUUUU---UCGGCGCG---CgGUG- -5'
26778 3' -53.2 NC_005808.1 + 5753 0.68 0.582611
Target:  5'- cGCGCCGGGc---AGCgaGUGCGCCAg -3'
miRNA:   3'- uCGUGGCUUuuuuUCGg-CGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 21022 0.69 0.537409
Target:  5'- cGcCACCGAAGu--GGCCGaGCGgCACg -3'
miRNA:   3'- uC-GUGGCUUUuuuUCGGCgCGCgGUG- -5'
26778 3' -53.2 NC_005808.1 + 19960 0.68 0.598632
Target:  5'- uGCACUGGAAGGAaaucagcgacuaccuGcuGCCGCGCGCgGg -3'
miRNA:   3'- uCGUGGCUUUUUU---------------U--CGGCGCGCGgUg -5'
26778 3' -53.2 NC_005808.1 + 28271 0.66 0.741856
Target:  5'- aGGC-CCGgcAGuucagccAAGgCGCGCGCCAg -3'
miRNA:   3'- -UCGuGGCuuUUu------UUCgGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 34381 0.68 0.628526
Target:  5'- cGGcCGCCGAccAgcgcgacuacGAGGCCGUGCGCgAUg -3'
miRNA:   3'- -UC-GUGGCUuuU----------UUUCGGCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 8970 0.68 0.58718
Target:  5'- cGUGCCGGAuucgcagcgguGGCCGUGCcGCCAg -3'
miRNA:   3'- uCGUGGCUUuuuu-------UCGGCGCG-CGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.