miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 3' -53.2 NC_005808.1 + 41960 0.67 0.651546
Target:  5'- gGGCACCGAcucGAcgccGGAcGCCGUGU-CCACg -3'
miRNA:   3'- -UCGUGGCU---UU----UUUuCGGCGCGcGGUG- -5'
26778 3' -53.2 NC_005808.1 + 5807 0.67 0.651546
Target:  5'- cAGCGCCagcGGAuAGucGGGCaugGCGUGCCGCa -3'
miRNA:   3'- -UCGUGG---CUUuUU--UUCGg--CGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 24905 0.67 0.64004
Target:  5'- cGCGCCGGAAugaa--CGUGCGCgACu -3'
miRNA:   3'- uCGUGGCUUUuuuucgGCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 27259 0.67 0.64004
Target:  5'- aGGCucuugGCCGAGGcaauGAAccgcaguucGCCGCGCGCCu- -3'
miRNA:   3'- -UCG-----UGGCUUUu---UUU---------CGGCGCGCGGug -5'
26778 3' -53.2 NC_005808.1 + 34537 0.67 0.64004
Target:  5'- aGGCAgCGAccu--GGgCGCGCGUCAUg -3'
miRNA:   3'- -UCGUgGCUuuuuuUCgGCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 4391 0.67 0.64004
Target:  5'- aGGCGCCGucgcgccGGGCCuugaGCGUGCgGCa -3'
miRNA:   3'- -UCGUGGCuuuuu--UUCGG----CGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 31933 0.67 0.64004
Target:  5'- cGCACUGGAcac-GGCgGCGCGUuuCACg -3'
miRNA:   3'- uCGUGGCUUuuuuUCGgCGCGCG--GUG- -5'
26778 3' -53.2 NC_005808.1 + 28968 0.67 0.64004
Target:  5'- cGCGCCGGAcuu--GCUGC-CGCUACc -3'
miRNA:   3'- uCGUGGCUUuuuuuCGGCGcGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 17904 0.67 0.64004
Target:  5'- uGGCACCGAugGAcAGCCuggGCGUGgacguggcCCGCg -3'
miRNA:   3'- -UCGUGGCUuuUUuUCGG---CGCGC--------GGUG- -5'
26778 3' -53.2 NC_005808.1 + 41115 0.68 0.633132
Target:  5'- cAGCACUGcGAuaccccggccugccaGGAGGCCGCcgaccGCGCCGu -3'
miRNA:   3'- -UCGUGGCuUU---------------UUUUCGGCG-----CGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 34381 0.68 0.628526
Target:  5'- cGGcCGCCGAccAgcgcgacuacGAGGCCGUGCGCgAUg -3'
miRNA:   3'- -UC-GUGGCUuuU----------UUUCGGCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 41913 0.68 0.628526
Target:  5'- gGGCGCCc------GGCCG-GCGCCGCc -3'
miRNA:   3'- -UCGUGGcuuuuuuUCGGCgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 39868 0.68 0.628526
Target:  5'- cAGCGCCG------GGCCGCGCucaagcguccgGCCAa -3'
miRNA:   3'- -UCGUGGCuuuuuuUCGGCGCG-----------CGGUg -5'
26778 3' -53.2 NC_005808.1 + 23314 0.68 0.625071
Target:  5'- cGGCACUGGccGGGAugacgugguAGCCGCGCaauucgacggccucGCCGCc -3'
miRNA:   3'- -UCGUGGCU--UUUUu--------UCGGCGCG--------------CGGUG- -5'
26778 3' -53.2 NC_005808.1 + 13950 0.68 0.621618
Target:  5'- cGGCACCGAucuggcacugcgcggGAAcuGGCCGgccucaucCGCGCC-Cg -3'
miRNA:   3'- -UCGUGGCU---------------UUUuuUCGGC--------GCGCGGuG- -5'
26778 3' -53.2 NC_005808.1 + 33683 0.68 0.617015
Target:  5'- cGC-CCGA-----AGCCaucgaGCGCGCCGCc -3'
miRNA:   3'- uCGuGGCUuuuuuUCGG-----CGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 40162 0.68 0.617015
Target:  5'- uGGCGCCGAucuucGAGGCCGgccUGCuGCCGu -3'
miRNA:   3'- -UCGUGGCUuuu--UUUCGGC---GCG-CGGUg -5'
26778 3' -53.2 NC_005808.1 + 41487 0.68 0.606667
Target:  5'- cGgGCCGAugcgcgacauGCCGCGCGaCACg -3'
miRNA:   3'- uCgUGGCUuuuuuu----CGGCGCGCgGUG- -5'
26778 3' -53.2 NC_005808.1 + 4496 0.68 0.605518
Target:  5'- -cCGCCGGAu----GCgCGCgGCGCCACa -3'
miRNA:   3'- ucGUGGCUUuuuuuCG-GCG-CGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 13535 0.68 0.605518
Target:  5'- cGCGCCGAAcugucGGCCGCcugacucgGUGcCCACg -3'
miRNA:   3'- uCGUGGCUUuuuu-UCGGCG--------CGC-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.