miRNA display CGI


Results 61 - 80 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 3' -53.2 NC_005808.1 + 16537 0.68 0.594047
Target:  5'- gAGUucGCCGAGcgcauGGAGCgCGCcCGCCGCg -3'
miRNA:   3'- -UCG--UGGCUUuu---UUUCG-GCGcGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 16584 0.71 0.415025
Target:  5'- cGCGCCGGAc-GAGGCCGaCcacgcgaugguguugGCGCCGCc -3'
miRNA:   3'- uCGUGGCUUuuUUUCGGC-G---------------CGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 16808 0.67 0.651546
Target:  5'- -aUACCGAGcgc--GCCGCGCGCauCGCg -3'
miRNA:   3'- ucGUGGCUUuuuuuCGGCGCGCG--GUG- -5'
26778 3' -53.2 NC_005808.1 + 16943 0.73 0.321047
Target:  5'- cGGCGCCGucc---AGCaGCGUGCCGCg -3'
miRNA:   3'- -UCGUGGCuuuuuuUCGgCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 17074 0.67 0.685901
Target:  5'- cGCGCaCGAAGGcGAAGCCG-GCGCgGu -3'
miRNA:   3'- uCGUG-GCUUUU-UUUCGGCgCGCGgUg -5'
26778 3' -53.2 NC_005808.1 + 17263 0.77 0.176236
Target:  5'- cGGCaaGCCGggGAuauugccguccacGAAGCCG-GCGCCGCg -3'
miRNA:   3'- -UCG--UGGCuuUU-------------UUUCGGCgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 17291 0.66 0.741856
Target:  5'- gAGCGCCGGuggcAGGGCCG---GCCGCa -3'
miRNA:   3'- -UCGUGGCUuuu-UUUCGGCgcgCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 17392 0.67 0.685901
Target:  5'- cGCGCCGAcgcaccgcuucGAuucAGCgGCGC-CCACg -3'
miRNA:   3'- uCGUGGCU-----------UUuuuUCGgCGCGcGGUG- -5'
26778 3' -53.2 NC_005808.1 + 17706 0.69 0.514156
Target:  5'- cGgGCCGGGAAAugcccaucgcggcAAGCUGCGCGCa-- -3'
miRNA:   3'- uCgUGGCUUUUU-------------UUCGGCGCGCGgug -5'
26778 3' -53.2 NC_005808.1 + 17856 0.69 0.515254
Target:  5'- cAGCAUgGGuc-GAGGCCGCGCaGgCGCg -3'
miRNA:   3'- -UCGUGgCUuuuUUUCGGCGCG-CgGUG- -5'
26778 3' -53.2 NC_005808.1 + 17904 0.67 0.64004
Target:  5'- uGGCACCGAugGAcAGCCuggGCGUGgacguggcCCGCg -3'
miRNA:   3'- -UCGUGGCUuuUUuUCGG---CGCGC--------GGUG- -5'
26778 3' -53.2 NC_005808.1 + 18159 0.75 0.246585
Target:  5'- uGuCGCCGA-----GGCCGCGCGCgGCa -3'
miRNA:   3'- uC-GUGGCUuuuuuUCGGCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 18268 0.68 0.57122
Target:  5'- uGCGCCGAGAAcuugccGGCCgucaGCGgGCCGg -3'
miRNA:   3'- uCGUGGCUUUUuu----UCGG----CGCgCGGUg -5'
26778 3' -53.2 NC_005808.1 + 18371 0.71 0.441023
Target:  5'- -uCAUCGAGAAGAucGGCCGCuCGCCGg -3'
miRNA:   3'- ucGUGGCUUUUUU--UCGGCGcGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 18445 0.75 0.246585
Target:  5'- uGCACCGAAAacguGAcGGUCGCGgCGCCGg -3'
miRNA:   3'- uCGUGGCUUU----UUuUCGGCGC-GCGGUg -5'
26778 3' -53.2 NC_005808.1 + 18542 0.7 0.479552
Target:  5'- uGGCcugGCCGAAGucgaucacgucgguGGAGGCCGCGC-UCGCg -3'
miRNA:   3'- -UCG---UGGCUUU--------------UUUUCGGCGCGcGGUG- -5'
26778 3' -53.2 NC_005808.1 + 18585 0.66 0.697256
Target:  5'- -uCGCUGAAuu--GGCCGaCGCGCCcACc -3'
miRNA:   3'- ucGUGGCUUuuuuUCGGC-GCGCGG-UG- -5'
26778 3' -53.2 NC_005808.1 + 18685 0.66 0.697256
Target:  5'- cGCcuauGCCGGcauGGAAGCCGCggGCGUgGCg -3'
miRNA:   3'- uCG----UGGCUuu-UUUUCGGCG--CGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 18830 0.7 0.476366
Target:  5'- aAGCugCGAAuuuugcgcggcauguAGAAGGCCGgGCGgcCCAUg -3'
miRNA:   3'- -UCGugGCUU---------------UUUUUCGGCgCGC--GGUG- -5'
26778 3' -53.2 NC_005808.1 + 18853 0.81 0.102955
Target:  5'- uGGCGCCGGcauggcgcuGCUGCGCGCCACc -3'
miRNA:   3'- -UCGUGGCUuuuuuu---CGGCGCGCGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.