miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 3' -53.2 NC_005808.1 + 29977 0.67 0.674489
Target:  5'- cAGCAgCGAugccGAGCgCGUcgGCGCCAUg -3'
miRNA:   3'- -UCGUgGCUuuuuUUCG-GCG--CGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 29565 0.66 0.708542
Target:  5'- aAGCAacgCGAugacGAGGCCGU-CGCCACu -3'
miRNA:   3'- -UCGUg--GCUuuu-UUUCGGCGcGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 29516 0.7 0.472134
Target:  5'- uGCGCgCGu--GGAGGCCGaGCGCCAa -3'
miRNA:   3'- uCGUG-GCuuuUUUUCGGCgCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 29326 0.66 0.716394
Target:  5'- cGGCGCUGAAAGAcgccaaggauggcaAcuGGCUG-GCGCUACu -3'
miRNA:   3'- -UCGUGGCUUUUU--------------U--UCGGCgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 29089 0.71 0.411109
Target:  5'- gGGCGCCGAGGucAGGCC-CGUGCgGg -3'
miRNA:   3'- -UCGUGGCUUUuuUUCGGcGCGCGgUg -5'
26778 3' -53.2 NC_005808.1 + 28968 0.67 0.64004
Target:  5'- cGCGCCGGAcuu--GCUGC-CGCUACc -3'
miRNA:   3'- uCGUGGCUUuuuuuCGGCGcGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 28840 0.68 0.594047
Target:  5'- uGCgGCCGGAcuugccGAAGCUGUcccaGCGCCGCg -3'
miRNA:   3'- uCG-UGGCUUuu----UUUCGGCG----CGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 28804 0.69 0.54861
Target:  5'- --uGCCGAucuuGAGcAGCCaGCGCGCCGu -3'
miRNA:   3'- ucgUGGCUu---UUUuUCGG-CGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 28666 0.71 0.451266
Target:  5'- cGGUGCCGGc----GGCCucgccagcgcgGCGCGCCACg -3'
miRNA:   3'- -UCGUGGCUuuuuuUCGG-----------CGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 28381 0.72 0.373245
Target:  5'- cGCGCC--AAGGAAGCCGCgcuGCGCCu- -3'
miRNA:   3'- uCGUGGcuUUUUUUCGGCG---CGCGGug -5'
26778 3' -53.2 NC_005808.1 + 28271 0.66 0.741856
Target:  5'- aGGC-CCGgcAGuucagccAAGgCGCGCGCCAg -3'
miRNA:   3'- -UCGuGGCuuUUu------UUCgGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 28011 0.71 0.451266
Target:  5'- aGGCGCUG-GAAGAAGCCGaucaugucgGCGUCGCc -3'
miRNA:   3'- -UCGUGGCuUUUUUUCGGCg--------CGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 27979 0.75 0.260241
Target:  5'- cGGCGCCGGAAGcaugGAAGCCGaCGCaCUGCu -3'
miRNA:   3'- -UCGUGGCUUUU----UUUCGGC-GCGcGGUG- -5'
26778 3' -53.2 NC_005808.1 + 27842 0.68 0.592902
Target:  5'- uGGCGCCG-------GCCGCGcCGCUGCu -3'
miRNA:   3'- -UCGUGGCuuuuuuuCGGCGC-GCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 27839 0.71 0.451266
Target:  5'- cGaCACCGAcac---GCUGCGCGCCAa -3'
miRNA:   3'- uC-GUGGCUuuuuuuCGGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 27785 0.72 0.355221
Target:  5'- cGUACaCGAAGcgcgcGCCGCGCaGCCGCa -3'
miRNA:   3'- uCGUG-GCUUUuuuu-CGGCGCG-CGGUG- -5'
26778 3' -53.2 NC_005808.1 + 27773 0.67 0.685901
Target:  5'- cGGCAUCGAccugggcGAAGGCa--GCGCCGCc -3'
miRNA:   3'- -UCGUGGCUuu-----UUUUCGgcgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 27680 0.73 0.312897
Target:  5'- -cCACCGuggucuuGGAAuacAGGCCGCGCGCCGg -3'
miRNA:   3'- ucGUGGCu------UUUU---UUCGGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 27582 0.65 0.749485
Target:  5'- gGGCACCGgcAGcAGGCgGCGCcagauggcguggucGUCGCc -3'
miRNA:   3'- -UCGUGGCuuUUuUUCGgCGCG--------------CGGUG- -5'
26778 3' -53.2 NC_005808.1 + 27457 0.77 0.187015
Target:  5'- uGGCGCUGGuau---GCCaGCGCGCCGCg -3'
miRNA:   3'- -UCGUGGCUuuuuuuCGG-CGCGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.