Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26779 | 3' | -62.3 | NC_005808.1 | + | 33265 | 0.67 | 0.237575 |
Target: 5'- aAGGAUGCcGCCGCCcgccGCGccgacgugcGCCGCc -3' miRNA: 3'- -UCCUACGaCGGCGGc---CGCua-------CGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 4632 | 0.67 | 0.233346 |
Target: 5'- gGGGAUGCUggGCCacgcugcGUCGGCcaucgcgucaaggucGAUGCCGUa -3' miRNA: 3'- -UCCUACGA--CGG-------CGGCCG---------------CUACGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 14267 | 0.67 | 0.231553 |
Target: 5'- uGGuugGCcugcugcaccaUGCUGUCGGCGAUGCgGCc -3' miRNA: 3'- uCCua-CG-----------ACGGCGGCCGCUACGgCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 9512 | 0.68 | 0.214259 |
Target: 5'- gAGGAUGUagGCCGCCG-CGucGCUGCg -3' miRNA: 3'- -UCCUACGa-CGGCGGCcGCuaCGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 8285 | 0.68 | 0.214259 |
Target: 5'- cAGGGccacGCUGCCggggcagugcaGCCaGCGGUGCgCGCUg -3' miRNA: 3'- -UCCUa---CGACGG-----------CGGcCGCUACG-GCGA- -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 15164 | 0.68 | 0.214259 |
Target: 5'- cAGGGccUGCgGCCGCCGggcGCGGUGCgccaggCGCg -3' miRNA: 3'- -UCCU--ACGaCGGCGGC---CGCUACG------GCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 39761 | 0.68 | 0.214259 |
Target: 5'- -uGGUGCUGgCGCCGcuGCGcgugGCCGCg -3' miRNA: 3'- ucCUACGACgGCGGC--CGCua--CGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 16352 | 0.68 | 0.208745 |
Target: 5'- cGGGUGCccgUGCCuUCGGCGAcGCgCGCa -3' miRNA: 3'- uCCUACG---ACGGcGGCCGCUaCG-GCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 19480 | 0.69 | 0.182984 |
Target: 5'- cAGGAgccguuaccGCUGUCGCCgugGGCGccGCCGUUg -3' miRNA: 3'- -UCCUa--------CGACGGCGG---CCGCuaCGGCGA- -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 30372 | 0.69 | 0.182984 |
Target: 5'- ----cGCUGuuGCCGGUG-UGCUGCg -3' miRNA: 3'- uccuaCGACggCGGCCGCuACGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 38166 | 0.69 | 0.178182 |
Target: 5'- uGGcGGUGUUGCgGCCGGguacgaccuaCGAcUGCCGCa -3' miRNA: 3'- -UC-CUACGACGgCGGCC----------GCU-ACGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 16974 | 0.69 | 0.178182 |
Target: 5'- uGGAcGC-GCUGCUGGCGAccgcGCCGCc -3' miRNA: 3'- uCCUaCGaCGGCGGCCGCUa---CGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 33368 | 0.69 | 0.164441 |
Target: 5'- uGGAa-CUGCCGCCgGGCGc-GCCGCa -3' miRNA: 3'- uCCUacGACGGCGG-CCGCuaCGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 21733 | 0.69 | 0.164441 |
Target: 5'- cGGAUGCcaCCGuuGgGCGcgGCCGCg -3' miRNA: 3'- uCCUACGacGGCggC-CGCuaCGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 33037 | 0.7 | 0.154141 |
Target: 5'- cGGAUGCUcGCCaCCGGCGAgcagaucgcacugGCCGa- -3' miRNA: 3'- uCCUACGA-CGGcGGCCGCUa------------CGGCga -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 29111 | 0.7 | 0.151659 |
Target: 5'- cGGGAcuUGCUGCCGgucacgCGcGCGAgGCCGCa -3' miRNA: 3'- -UCCU--ACGACGGCg-----GC-CGCUaCGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 14799 | 0.7 | 0.139786 |
Target: 5'- gAGGAcgUGCUGCgGCUGcGCGgcGCgCGCUu -3' miRNA: 3'- -UCCU--ACGACGgCGGC-CGCuaCG-GCGA- -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 31506 | 0.7 | 0.136021 |
Target: 5'- -----cUUGCCGCCGGCG-UGCUGCUg -3' miRNA: 3'- uccuacGACGGCGGCCGCuACGGCGA- -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 41559 | 0.71 | 0.13235 |
Target: 5'- cGGcgacAUGCUGCCGCCGGCcguggccuuccaGGUGUucgaCGCUg -3' miRNA: 3'- uCC----UACGACGGCGGCCG------------CUACG----GCGA- -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 28973 | 0.71 | 0.13235 |
Target: 5'- cGGAcuUGCUGCCGCUacCGAUGCUGUc -3' miRNA: 3'- uCCU--ACGACGGCGGccGCUACGGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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