miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2678 3' -53.3 NC_001491.2 + 128157 0.66 0.970741
Target:  5'- cUGGUACAGGgaCGaaguaucauuUGCUCGCA-UAGCCa -3'
miRNA:   3'- aGCCGUGUUC--GC----------GCGAGUGUuAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 62235 0.66 0.970741
Target:  5'- aUCGaaaaGCACAAuCGUGUUCGCAucUAGUCa -3'
miRNA:   3'- -AGC----CGUGUUcGCGCGAGUGUu-AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 47119 0.66 0.970741
Target:  5'- cCGGUGCAcgccccAGCagGCGCUC-CAG-AGCCc -3'
miRNA:   3'- aGCCGUGU------UCG--CGCGAGuGUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 137042 0.66 0.970741
Target:  5'- -aGGCG-AGGCGCGCUguuugggagCGCAGUccuguuGCCg -3'
miRNA:   3'- agCCGUgUUCGCGCGA---------GUGUUAu-----CGG- -5'
2678 3' -53.3 NC_001491.2 + 84216 0.66 0.970741
Target:  5'- -aGGCACcuccauacugGAGCGUGCcaCACAGU-GCUa -3'
miRNA:   3'- agCCGUG----------UUCGCGCGa-GUGUUAuCGG- -5'
2678 3' -53.3 NC_001491.2 + 69550 0.66 0.970445
Target:  5'- cUCGGgGCAGGCaaagagaGCGUUgACAggGGCg -3'
miRNA:   3'- -AGCCgUGUUCG-------CGCGAgUGUuaUCGg -5'
2678 3' -53.3 NC_001491.2 + 53186 0.66 0.967689
Target:  5'- gCGGCAuCAAGCGgaGuCUUGCAGguGCCa -3'
miRNA:   3'- aGCCGU-GUUCGCg-C-GAGUGUUauCGG- -5'
2678 3' -53.3 NC_001491.2 + 34181 0.66 0.967689
Target:  5'- gCGGCGgAGGCGCcgggGCU-ACGAccGCCa -3'
miRNA:   3'- aGCCGUgUUCGCG----CGAgUGUUauCGG- -5'
2678 3' -53.3 NC_001491.2 + 1967 0.66 0.967689
Target:  5'- aCGGCGCAGGCGa-CcCGCGG-AGUCa -3'
miRNA:   3'- aGCCGUGUUCGCgcGaGUGUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 10523 0.66 0.964418
Target:  5'- gCGGCguACcuGCGCGCcCGC---GGCCg -3'
miRNA:   3'- aGCCG--UGuuCGCGCGaGUGuuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 142323 0.66 0.964418
Target:  5'- aUCGaCACGGGCGUuuaCUCGCAc-GGCCg -3'
miRNA:   3'- -AGCcGUGUUCGCGc--GAGUGUuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 58432 0.66 0.964079
Target:  5'- gCGGCcCGAGUGCcccccauuucaugGUagaCGCGGUAGCCa -3'
miRNA:   3'- aGCCGuGUUCGCG-------------CGa--GUGUUAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 128563 0.66 0.960922
Target:  5'- gCGGCACuGGCGCuggucguuCUCAUcacAGCCg -3'
miRNA:   3'- aGCCGUGuUCGCGc-------GAGUGuuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 2987 0.66 0.958714
Target:  5'- gCGGCugGgcugcugcccccgggAGCGgGCguuugUCugGGUGGCCc -3'
miRNA:   3'- aGCCGugU---------------UCGCgCG-----AGugUUAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 28594 0.66 0.957195
Target:  5'- -aGGUACGGGCGCaggGCcCGCGgggAUAGCg -3'
miRNA:   3'- agCCGUGUUCGCG---CGaGUGU---UAUCGg -5'
2678 3' -53.3 NC_001491.2 + 57998 0.66 0.957195
Target:  5'- gCGGUguuucaGCAAGUugGCGUaCGCcGUAGCCa -3'
miRNA:   3'- aGCCG------UGUUCG--CGCGaGUGuUAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 110715 0.66 0.957195
Target:  5'- gCGGCACGcuGuCGCGC-CGaguUGGCCa -3'
miRNA:   3'- aGCCGUGUu-C-GCGCGaGUguuAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 7756 0.66 0.957195
Target:  5'- gUUGGCACGGugccauGCGCGCUCcCGAgacggggGGUg -3'
miRNA:   3'- -AGCCGUGUU------CGCGCGAGuGUUa------UCGg -5'
2678 3' -53.3 NC_001491.2 + 146692 0.66 0.956422
Target:  5'- gCGGUACAcccAGCGacggugcguggaGCUCugGGUcuGGCCc -3'
miRNA:   3'- aGCCGUGU---UCGCg-----------CGAGugUUA--UCGG- -5'
2678 3' -53.3 NC_001491.2 + 4005 0.66 0.953233
Target:  5'- gUGGCAgggcccaGAGCGCGUUCcCGGccGCCa -3'
miRNA:   3'- aGCCGUg------UUCGCGCGAGuGUUauCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.