Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2678 | 3' | -53.3 | NC_001491.2 | + | 1967 | 0.66 | 0.967689 |
Target: 5'- aCGGCGCAGGCGa-CcCGCGG-AGUCa -3' miRNA: 3'- aGCCGUGUUCGCgcGaGUGUUaUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 142323 | 0.66 | 0.964418 |
Target: 5'- aUCGaCACGGGCGUuuaCUCGCAc-GGCCg -3' miRNA: 3'- -AGCcGUGUUCGCGc--GAGUGUuaUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 8934 | 0.67 | 0.929763 |
Target: 5'- cCGGUACGAGCaGCGgUUcCuggAGCCg -3' miRNA: 3'- aGCCGUGUUCG-CGCgAGuGuuaUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 30078 | 0.67 | 0.929763 |
Target: 5'- cCGGCGCGuGUGUGUauagcgUCACAucGUGGCg -3' miRNA: 3'- aGCCGUGUuCGCGCG------AGUGU--UAUCGg -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 109645 | 0.67 | 0.939894 |
Target: 5'- aCGGCACGuGCGUuuGC-CGCcagGGCCu -3' miRNA: 3'- aGCCGUGUuCGCG--CGaGUGuuaUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 39051 | 0.67 | 0.944586 |
Target: 5'- gUCGGCGC-AGCGCcagGCUgAgAAgacGCCa -3' miRNA: 3'- -AGCCGUGuUCGCG---CGAgUgUUau-CGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 139643 | 0.67 | 0.944586 |
Target: 5'- -gGGCAgAAGCGCaUUgACGGcAGCCa -3' miRNA: 3'- agCCGUgUUCGCGcGAgUGUUaUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 1774 | 0.67 | 0.949031 |
Target: 5'- -gGGaaCGCGGGUGCGCUCGCc--GGCg -3' miRNA: 3'- agCC--GUGUUCGCGCGAGUGuuaUCGg -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 12179 | 0.68 | 0.899402 |
Target: 5'- gCGGCgaGCGAGCGCGCagcggaagaccUCggugccgGCGGUGGCg -3' miRNA: 3'- aGCCG--UGUUCGCGCG-----------AG-------UGUUAUCGg -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 27113 | 0.68 | 0.899402 |
Target: 5'- cCGGCGCcgcuccgGAGCGCGUcCGCu---GCCu -3' miRNA: 3'- aGCCGUG-------UUCGCGCGaGUGuuauCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 113201 | 0.68 | 0.906497 |
Target: 5'- gCaGCAU-AGCGCGUUCGCAGaguUGGCg -3' miRNA: 3'- aGcCGUGuUCGCGCGAGUGUU---AUCGg -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 33218 | 0.68 | 0.906497 |
Target: 5'- gCGGC-CGGGaaCGCGCUCugGGcccuGCCa -3' miRNA: 3'- aGCCGuGUUC--GCGCGAGugUUau--CGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 34379 | 0.68 | 0.912687 |
Target: 5'- gCGGCA--AGCgGCGCUC-CGAgccccuggAGCCg -3' miRNA: 3'- aGCCGUguUCG-CGCGAGuGUUa-------UCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 80422 | 0.68 | 0.918629 |
Target: 5'- aCGGCACuGGGCGUGuCUC----UGGCCu -3' miRNA: 3'- aGCCGUG-UUCGCGC-GAGuguuAUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 3350 | 0.68 | 0.918629 |
Target: 5'- cUCGGCguuguagcGCAccAGCgGCGC-CACGGUccgGGCCa -3' miRNA: 3'- -AGCCG--------UGU--UCG-CGCGaGUGUUA---UCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 95888 | 0.68 | 0.923763 |
Target: 5'- cCGGCACccacggaGAGCGUGUUCAacuucGCCc -3' miRNA: 3'- aGCCGUG-------UUCGCGCGAGUguuauCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 132020 | 0.68 | 0.924321 |
Target: 5'- gUCGGUAUaugGAGCgGCGCUacgacCGAUAGCa -3' miRNA: 3'- -AGCCGUG---UUCG-CGCGAgu---GUUAUCGg -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 2613 | 0.68 | 0.924321 |
Target: 5'- --cGCGCAAGC-CGCgUCGCug-GGCCg -3' miRNA: 3'- agcCGUGUUCGcGCG-AGUGuuaUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 69836 | 0.69 | 0.879302 |
Target: 5'- uUUGGCACuagguGGCGUggGUUCACgGAUGGCg -3' miRNA: 3'- -AGCCGUGu----UCGCG--CGAGUG-UUAUCGg -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 12551 | 0.69 | 0.879302 |
Target: 5'- -gGGCGCGggAGCGCGCgagCGCc---GCCu -3' miRNA: 3'- agCCGUGU--UCGCGCGa--GUGuuauCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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