Results 61 - 69 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 2678 | 3' | -53.3 | NC_001491.2 | + | 4005 | 0.66 | 0.953233 |
|
Target: 5'- gUGGCAgggcccaGAGCGCGUUCcCGGccGCCa -3' miRNA: 3'- aGCCGUg------UUCGCGCGAGuGUUauCGG- -5' |
|||||||
| 2678 | 3' | -53.3 | NC_001491.2 | + | 33875 | 0.66 | 0.953233 |
|
Target: 5'- gUGGCGCcgcuGGUGCGCU-ACAAc-GCCg -3' miRNA: 3'- aGCCGUGu---UCGCGCGAgUGUUauCGG- -5' |
|||||||
| 2678 | 3' | -53.3 | NC_001491.2 | + | 146692 | 0.66 | 0.956422 |
|
Target: 5'- gCGGUACAcccAGCGacggugcguggaGCUCugGGUcuGGCCc -3' miRNA: 3'- aGCCGUGU---UCGCg-----------CGAGugUUA--UCGG- -5' |
|||||||
| 2678 | 3' | -53.3 | NC_001491.2 | + | 28594 | 0.66 | 0.957195 |
|
Target: 5'- -aGGUACGGGCGCaggGCcCGCGgggAUAGCg -3' miRNA: 3'- agCCGUGUUCGCG---CGaGUGU---UAUCGg -5' |
|||||||
| 2678 | 3' | -53.3 | NC_001491.2 | + | 57998 | 0.66 | 0.957195 |
|
Target: 5'- gCGGUguuucaGCAAGUugGCGUaCGCcGUAGCCa -3' miRNA: 3'- aGCCG------UGUUCG--CGCGaGUGuUAUCGG- -5' |
|||||||
| 2678 | 3' | -53.3 | NC_001491.2 | + | 110715 | 0.66 | 0.957195 |
|
Target: 5'- gCGGCACGcuGuCGCGC-CGaguUGGCCa -3' miRNA: 3'- aGCCGUGUu-C-GCGCGaGUguuAUCGG- -5' |
|||||||
| 2678 | 3' | -53.3 | NC_001491.2 | + | 7756 | 0.66 | 0.957195 |
|
Target: 5'- gUUGGCACGGugccauGCGCGCUCcCGAgacggggGGUg -3' miRNA: 3'- -AGCCGUGUU------CGCGCGAGuGUUa------UCGg -5' |
|||||||
| 2678 | 3' | -53.3 | NC_001491.2 | + | 2987 | 0.66 | 0.958714 |
|
Target: 5'- gCGGCugGgcugcugcccccgggAGCGgGCguuugUCugGGUGGCCc -3' miRNA: 3'- aGCCGugU---------------UCGCgCG-----AGugUUAUCGG- -5' |
|||||||
| 2678 | 3' | -53.3 | NC_001491.2 | + | 128157 | 0.66 | 0.970741 |
|
Target: 5'- cUGGUACAGGgaCGaaguaucauuUGCUCGCA-UAGCCa -3' miRNA: 3'- aGCCGUGUUC--GC----------GCGAGUGUuAUCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home