miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2678 3' -53.3 NC_001491.2 + 65400 1.12 0.003093
Target:  5'- gUCGGCACAAGCGCGCUCACAAUAGCCc -3'
miRNA:   3'- -AGCCGUGUUCGCGCGAGUGUUAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 100424 0.77 0.480798
Target:  5'- aUCGGCcCGAGCcCGCUCGCAgcaugucAUAGUCg -3'
miRNA:   3'- -AGCCGuGUUCGcGCGAGUGU-------UAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 1859 0.76 0.531394
Target:  5'- -gGGUACAGGCGCGCgaaCGCGGccucGGCCc -3'
miRNA:   3'- agCCGUGUUCGCGCGa--GUGUUa---UCGG- -5'
2678 3' -53.3 NC_001491.2 + 25037 0.73 0.657018
Target:  5'- cCGGCACcgaggucuuccgcuGCGCGCUCGCuc--GCCg -3'
miRNA:   3'- aGCCGUGuu------------CGCGCGAGUGuuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 135917 0.73 0.666421
Target:  5'- -aGGUaguGCAAuaGCGCUaCGCAAUAGCCc -3'
miRNA:   3'- agCCG---UGUUcgCGCGA-GUGUUAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 24679 0.73 0.676841
Target:  5'- gCGGCGCucGCGCGCUCcCGc--GCCc -3'
miRNA:   3'- aGCCGUGuuCGCGCGAGuGUuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 50480 0.73 0.676841
Target:  5'- -aGGCACGGGUGCuGCccaacuaCAUGAUGGCCa -3'
miRNA:   3'- agCCGUGUUCGCG-CGa------GUGUUAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 102778 0.73 0.687223
Target:  5'- -gGGUGCGuuGCGCGCUCcaGCAAacauuUAGCCa -3'
miRNA:   3'- agCCGUGUu-CGCGCGAG--UGUU-----AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 1936 0.72 0.728174
Target:  5'- gCGGCugAGGUgGCGCUCcCGG-GGCCa -3'
miRNA:   3'- aGCCGugUUCG-CGCGAGuGUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 1735 0.72 0.758008
Target:  5'- gUCGG-GCAGGaCGCGCUgGCGGUacucccucggAGCCa -3'
miRNA:   3'- -AGCCgUGUUC-GCGCGAgUGUUA----------UCGG- -5'
2678 3' -53.3 NC_001491.2 + 3399 0.71 0.77733
Target:  5'- aCGGCGCGcaccgcgaGGCGCaGCUCGuCGG-AGCCc -3'
miRNA:   3'- aGCCGUGU--------UCGCG-CGAGU-GUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 123321 0.71 0.786791
Target:  5'- -gGGCuccauCAAGCGCGCUCcagcGCGuggAGCUa -3'
miRNA:   3'- agCCGu----GUUCGCGCGAG----UGUua-UCGG- -5'
2678 3' -53.3 NC_001491.2 + 79644 0.71 0.796107
Target:  5'- cUGGCGCGGGUGCGCagucuUCGCAcguGCUc -3'
miRNA:   3'- aGCCGUGUUCGCGCG-----AGUGUuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 32631 0.71 0.796107
Target:  5'- cUGGCGgGAGCGuCGaagCGCAAgcgGGCCa -3'
miRNA:   3'- aGCCGUgUUCGC-GCga-GUGUUa--UCGG- -5'
2678 3' -53.3 NC_001491.2 + 105104 0.71 0.805267
Target:  5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3'
miRNA:   3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 104972 0.71 0.805267
Target:  5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3'
miRNA:   3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 105005 0.71 0.805267
Target:  5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3'
miRNA:   3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 105071 0.71 0.805267
Target:  5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3'
miRNA:   3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 105038 0.71 0.805267
Target:  5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3'
miRNA:   3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 25477 0.7 0.814262
Target:  5'- gCGG-ACGAGCGCuaUUACAuaagGGCCg -3'
miRNA:   3'- aGCCgUGUUCGCGcgAGUGUua--UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.