miRNA display CGI


Results 21 - 40 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2678 3' -53.3 NC_001491.2 + 130757 0.7 0.840174
Target:  5'- -aGGCGCcAGUGCGCUuagaCGCGAUAGa- -3'
miRNA:   3'- agCCGUGuUCGCGCGA----GUGUUAUCgg -5'
2678 3' -53.3 NC_001491.2 + 26705 0.7 0.848424
Target:  5'- gCGGcCGCGGGCGCGCagguacgcCGCGGcGGCUg -3'
miRNA:   3'- aGCC-GUGUUCGCGCGa-------GUGUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 53893 0.7 0.848424
Target:  5'- -aGGCGCAGGCagGCGCcCAgGAccGCCa -3'
miRNA:   3'- agCCGUGUUCG--CGCGaGUgUUauCGG- -5'
2678 3' -53.3 NC_001491.2 + 51189 0.7 0.848424
Target:  5'- cUCGGCAaAAGCGCcggcuaccagcuGUUCGCA--GGCCc -3'
miRNA:   3'- -AGCCGUgUUCGCG------------CGAGUGUuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 83605 0.7 0.848424
Target:  5'- -aGGCACAAuCGCGCUUGgGGgacgcGGCCa -3'
miRNA:   3'- agCCGUGUUcGCGCGAGUgUUa----UCGG- -5'
2678 3' -53.3 NC_001491.2 + 48382 0.7 0.848424
Target:  5'- gCGGCuCAAGCGCGCccccggCGCGAccGUCc -3'
miRNA:   3'- aGCCGuGUUCGCGCGa-----GUGUUauCGG- -5'
2678 3' -53.3 NC_001491.2 + 26852 0.7 0.848424
Target:  5'- cCGcGCACAcGCGCGCUCguacaucugcggGCGcgAGCa -3'
miRNA:   3'- aGC-CGUGUuCGCGCGAG------------UGUuaUCGg -5'
2678 3' -53.3 NC_001491.2 + 33820 0.69 0.871914
Target:  5'- -gGGCuccgACGAGCuGCGcCUCGCGGUGcgcGCCg -3'
miRNA:   3'- agCCG----UGUUCG-CGC-GAGUGUUAU---CGG- -5'
2678 3' -53.3 NC_001491.2 + 12551 0.69 0.879302
Target:  5'- -gGGCGCGggAGCGCGCgagCGCc---GCCu -3'
miRNA:   3'- agCCGUGU--UCGCGCGa--GUGuuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 69836 0.69 0.879302
Target:  5'- uUUGGCACuagguGGCGUggGUUCACgGAUGGCg -3'
miRNA:   3'- -AGCCGUGu----UCGCG--CGAGUG-UUAUCGg -5'
2678 3' -53.3 NC_001491.2 + 10131 0.69 0.886458
Target:  5'- gCGGCGcCGGGC-CGCcCGCGGaGGCCu -3'
miRNA:   3'- aGCCGU-GUUCGcGCGaGUGUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 12179 0.68 0.899402
Target:  5'- gCGGCgaGCGAGCGCGCagcggaagaccUCggugccgGCGGUGGCg -3'
miRNA:   3'- aGCCG--UGUUCGCGCG-----------AG-------UGUUAUCGg -5'
2678 3' -53.3 NC_001491.2 + 27113 0.68 0.899402
Target:  5'- cCGGCGCcgcuccgGAGCGCGUcCGCu---GCCu -3'
miRNA:   3'- aGCCGUG-------UUCGCGCGaGUGuuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 33218 0.68 0.906497
Target:  5'- gCGGC-CGGGaaCGCGCUCugGGcccuGCCa -3'
miRNA:   3'- aGCCGuGUUC--GCGCGAGugUUau--CGG- -5'
2678 3' -53.3 NC_001491.2 + 113201 0.68 0.906497
Target:  5'- gCaGCAU-AGCGCGUUCGCAGaguUGGCg -3'
miRNA:   3'- aGcCGUGuUCGCGCGAGUGUU---AUCGg -5'
2678 3' -53.3 NC_001491.2 + 34379 0.68 0.912687
Target:  5'- gCGGCA--AGCgGCGCUC-CGAgccccuggAGCCg -3'
miRNA:   3'- aGCCGUguUCG-CGCGAGuGUUa-------UCGG- -5'
2678 3' -53.3 NC_001491.2 + 80422 0.68 0.918629
Target:  5'- aCGGCACuGGGCGUGuCUC----UGGCCu -3'
miRNA:   3'- aGCCGUG-UUCGCGC-GAGuguuAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 3350 0.68 0.918629
Target:  5'- cUCGGCguuguagcGCAccAGCgGCGC-CACGGUccgGGCCa -3'
miRNA:   3'- -AGCCG--------UGU--UCG-CGCGaGUGUUA---UCGG- -5'
2678 3' -53.3 NC_001491.2 + 95888 0.68 0.923763
Target:  5'- cCGGCACccacggaGAGCGUGUUCAacuucGCCc -3'
miRNA:   3'- aGCCGUG-------UUCGCGCGAGUguuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 132020 0.68 0.924321
Target:  5'- gUCGGUAUaugGAGCgGCGCUacgacCGAUAGCa -3'
miRNA:   3'- -AGCCGUG---UUCG-CGCGAgu---GUUAUCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.