miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2678 3' -53.3 NC_001491.2 + 4005 0.66 0.953233
Target:  5'- gUGGCAgggcccaGAGCGCGUUCcCGGccGCCa -3'
miRNA:   3'- aGCCGUg------UUCGCGCGAGuGUUauCGG- -5'
2678 3' -53.3 NC_001491.2 + 33875 0.66 0.953233
Target:  5'- gUGGCGCcgcuGGUGCGCU-ACAAc-GCCg -3'
miRNA:   3'- aGCCGUGu---UCGCGCGAgUGUUauCGG- -5'
2678 3' -53.3 NC_001491.2 + 1774 0.67 0.949031
Target:  5'- -gGGaaCGCGGGUGCGCUCGCc--GGCg -3'
miRNA:   3'- agCC--GUGUUCGCGCGAGUGuuaUCGg -5'
2678 3' -53.3 NC_001491.2 + 139643 0.67 0.944586
Target:  5'- -gGGCAgAAGCGCaUUgACGGcAGCCa -3'
miRNA:   3'- agCCGUgUUCGCGcGAgUGUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 39051 0.67 0.944586
Target:  5'- gUCGGCGC-AGCGCcagGCUgAgAAgacGCCa -3'
miRNA:   3'- -AGCCGUGuUCGCG---CGAgUgUUau-CGG- -5'
2678 3' -53.3 NC_001491.2 + 109645 0.67 0.939894
Target:  5'- aCGGCACGuGCGUuuGC-CGCcagGGCCu -3'
miRNA:   3'- aGCCGUGUuCGCG--CGaGUGuuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 8934 0.67 0.929763
Target:  5'- cCGGUACGAGCaGCGgUUcCuggAGCCg -3'
miRNA:   3'- aGCCGUGUUCG-CGCgAGuGuuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 30078 0.67 0.929763
Target:  5'- cCGGCGCGuGUGUGUauagcgUCACAucGUGGCg -3'
miRNA:   3'- aGCCGUGUuCGCGCG------AGUGU--UAUCGg -5'
2678 3' -53.3 NC_001491.2 + 2613 0.68 0.924321
Target:  5'- --cGCGCAAGC-CGCgUCGCug-GGCCg -3'
miRNA:   3'- agcCGUGUUCGcGCG-AGUGuuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 132020 0.68 0.924321
Target:  5'- gUCGGUAUaugGAGCgGCGCUacgacCGAUAGCa -3'
miRNA:   3'- -AGCCGUG---UUCG-CGCGAgu---GUUAUCGg -5'
2678 3' -53.3 NC_001491.2 + 95888 0.68 0.923763
Target:  5'- cCGGCACccacggaGAGCGUGUUCAacuucGCCc -3'
miRNA:   3'- aGCCGUG-------UUCGCGCGAGUguuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 80422 0.68 0.918629
Target:  5'- aCGGCACuGGGCGUGuCUC----UGGCCu -3'
miRNA:   3'- aGCCGUG-UUCGCGC-GAGuguuAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 3350 0.68 0.918629
Target:  5'- cUCGGCguuguagcGCAccAGCgGCGC-CACGGUccgGGCCa -3'
miRNA:   3'- -AGCCG--------UGU--UCG-CGCGaGUGUUA---UCGG- -5'
2678 3' -53.3 NC_001491.2 + 34379 0.68 0.912687
Target:  5'- gCGGCA--AGCgGCGCUC-CGAgccccuggAGCCg -3'
miRNA:   3'- aGCCGUguUCG-CGCGAGuGUUa-------UCGG- -5'
2678 3' -53.3 NC_001491.2 + 33218 0.68 0.906497
Target:  5'- gCGGC-CGGGaaCGCGCUCugGGcccuGCCa -3'
miRNA:   3'- aGCCGuGUUC--GCGCGAGugUUau--CGG- -5'
2678 3' -53.3 NC_001491.2 + 113201 0.68 0.906497
Target:  5'- gCaGCAU-AGCGCGUUCGCAGaguUGGCg -3'
miRNA:   3'- aGcCGUGuUCGCGCGAGUGUU---AUCGg -5'
2678 3' -53.3 NC_001491.2 + 27113 0.68 0.899402
Target:  5'- cCGGCGCcgcuccgGAGCGCGUcCGCu---GCCu -3'
miRNA:   3'- aGCCGUG-------UUCGCGCGaGUGuuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 12179 0.68 0.899402
Target:  5'- gCGGCgaGCGAGCGCGCagcggaagaccUCggugccgGCGGUGGCg -3'
miRNA:   3'- aGCCG--UGUUCGCGCG-----------AG-------UGUUAUCGg -5'
2678 3' -53.3 NC_001491.2 + 10131 0.69 0.886458
Target:  5'- gCGGCGcCGGGC-CGCcCGCGGaGGCCu -3'
miRNA:   3'- aGCCGU-GUUCGcGCGaGUGUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 12551 0.69 0.879302
Target:  5'- -gGGCGCGggAGCGCGCgagCGCc---GCCu -3'
miRNA:   3'- agCCGUGU--UCGCGCGa--GUGuuauCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.