Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2678 | 3' | -53.3 | NC_001491.2 | + | 12551 | 0.69 | 0.879302 |
Target: 5'- -gGGCGCGggAGCGCGCgagCGCc---GCCu -3' miRNA: 3'- agCCGUGU--UCGCGCGa--GUGuuauCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 33820 | 0.69 | 0.871914 |
Target: 5'- -gGGCuccgACGAGCuGCGcCUCGCGGUGcgcGCCg -3' miRNA: 3'- agCCG----UGUUCG-CGC-GAGUGUUAU---CGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 53893 | 0.7 | 0.848424 |
Target: 5'- -aGGCGCAGGCagGCGCcCAgGAccGCCa -3' miRNA: 3'- agCCGUGUUCG--CGCGaGUgUUauCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 26705 | 0.7 | 0.848424 |
Target: 5'- gCGGcCGCGGGCGCGCagguacgcCGCGGcGGCUg -3' miRNA: 3'- aGCC-GUGUUCGCGCGa-------GUGUUaUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 48382 | 0.7 | 0.848424 |
Target: 5'- gCGGCuCAAGCGCGCccccggCGCGAccGUCc -3' miRNA: 3'- aGCCGuGUUCGCGCGa-----GUGUUauCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 51189 | 0.7 | 0.848424 |
Target: 5'- cUCGGCAaAAGCGCcggcuaccagcuGUUCGCA--GGCCc -3' miRNA: 3'- -AGCCGUgUUCGCG------------CGAGUGUuaUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 83605 | 0.7 | 0.848424 |
Target: 5'- -aGGCACAAuCGCGCUUGgGGgacgcGGCCa -3' miRNA: 3'- agCCGUGUUcGCGCGAGUgUUa----UCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 26852 | 0.7 | 0.848424 |
Target: 5'- cCGcGCACAcGCGCGCUCguacaucugcggGCGcgAGCa -3' miRNA: 3'- aGC-CGUGUuCGCGCGAG------------UGUuaUCGg -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 130757 | 0.7 | 0.840174 |
Target: 5'- -aGGCGCcAGUGCGCUuagaCGCGAUAGa- -3' miRNA: 3'- agCCGUGuUCGCGCGA----GUGUUAUCgg -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 25477 | 0.7 | 0.814262 |
Target: 5'- gCGG-ACGAGCGCuaUUACAuaagGGCCg -3' miRNA: 3'- aGCCgUGUUCGCGcgAGUGUua--UCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 104972 | 0.71 | 0.805267 |
Target: 5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3' miRNA: 3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 105005 | 0.71 | 0.805267 |
Target: 5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3' miRNA: 3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 105038 | 0.71 | 0.805267 |
Target: 5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3' miRNA: 3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 105071 | 0.71 | 0.805267 |
Target: 5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3' miRNA: 3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 105104 | 0.71 | 0.805267 |
Target: 5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3' miRNA: 3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 79644 | 0.71 | 0.796107 |
Target: 5'- cUGGCGCGGGUGCGCagucuUCGCAcguGCUc -3' miRNA: 3'- aGCCGUGUUCGCGCG-----AGUGUuauCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 32631 | 0.71 | 0.796107 |
Target: 5'- cUGGCGgGAGCGuCGaagCGCAAgcgGGCCa -3' miRNA: 3'- aGCCGUgUUCGC-GCga-GUGUUa--UCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 123321 | 0.71 | 0.786791 |
Target: 5'- -gGGCuccauCAAGCGCGCUCcagcGCGuggAGCUa -3' miRNA: 3'- agCCGu----GUUCGCGCGAG----UGUua-UCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 3399 | 0.71 | 0.77733 |
Target: 5'- aCGGCGCGcaccgcgaGGCGCaGCUCGuCGG-AGCCc -3' miRNA: 3'- aGCCGUGU--------UCGCG-CGAGU-GUUaUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 1735 | 0.72 | 0.758008 |
Target: 5'- gUCGG-GCAGGaCGCGCUgGCGGUacucccucggAGCCa -3' miRNA: 3'- -AGCCgUGUUC-GCGCGAgUGUUA----------UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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