miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2678 3' -53.3 NC_001491.2 + 1735 0.72 0.758008
Target:  5'- gUCGG-GCAGGaCGCGCUgGCGGUacucccucggAGCCa -3'
miRNA:   3'- -AGCCgUGUUC-GCGCGAgUGUUA----------UCGG- -5'
2678 3' -53.3 NC_001491.2 + 1774 0.67 0.949031
Target:  5'- -gGGaaCGCGGGUGCGCUCGCc--GGCg -3'
miRNA:   3'- agCC--GUGUUCGCGCGAGUGuuaUCGg -5'
2678 3' -53.3 NC_001491.2 + 1859 0.76 0.531394
Target:  5'- -gGGUACAGGCGCGCgaaCGCGGccucGGCCc -3'
miRNA:   3'- agCCGUGUUCGCGCGa--GUGUUa---UCGG- -5'
2678 3' -53.3 NC_001491.2 + 1936 0.72 0.728174
Target:  5'- gCGGCugAGGUgGCGCUCcCGG-GGCCa -3'
miRNA:   3'- aGCCGugUUCG-CGCGAGuGUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 1967 0.66 0.967689
Target:  5'- aCGGCGCAGGCGa-CcCGCGG-AGUCa -3'
miRNA:   3'- aGCCGUGUUCGCgcGaGUGUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 2613 0.68 0.924321
Target:  5'- --cGCGCAAGC-CGCgUCGCug-GGCCg -3'
miRNA:   3'- agcCGUGUUCGcGCG-AGUGuuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 2987 0.66 0.958714
Target:  5'- gCGGCugGgcugcugcccccgggAGCGgGCguuugUCugGGUGGCCc -3'
miRNA:   3'- aGCCGugU---------------UCGCgCG-----AGugUUAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 3350 0.68 0.918629
Target:  5'- cUCGGCguuguagcGCAccAGCgGCGC-CACGGUccgGGCCa -3'
miRNA:   3'- -AGCCG--------UGU--UCG-CGCGaGUGUUA---UCGG- -5'
2678 3' -53.3 NC_001491.2 + 3399 0.71 0.77733
Target:  5'- aCGGCGCGcaccgcgaGGCGCaGCUCGuCGG-AGCCc -3'
miRNA:   3'- aGCCGUGU--------UCGCG-CGAGU-GUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 4005 0.66 0.953233
Target:  5'- gUGGCAgggcccaGAGCGCGUUCcCGGccGCCa -3'
miRNA:   3'- aGCCGUg------UUCGCGCGAGuGUUauCGG- -5'
2678 3' -53.3 NC_001491.2 + 7756 0.66 0.957195
Target:  5'- gUUGGCACGGugccauGCGCGCUCcCGAgacggggGGUg -3'
miRNA:   3'- -AGCCGUGUU------CGCGCGAGuGUUa------UCGg -5'
2678 3' -53.3 NC_001491.2 + 8934 0.67 0.929763
Target:  5'- cCGGUACGAGCaGCGgUUcCuggAGCCg -3'
miRNA:   3'- aGCCGUGUUCG-CGCgAGuGuuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 10040 0.66 0.953233
Target:  5'- gCGGCGCAcGCG-GuCUCGCu---GCCg -3'
miRNA:   3'- aGCCGUGUuCGCgC-GAGUGuuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 10131 0.69 0.886458
Target:  5'- gCGGCGcCGGGC-CGCcCGCGGaGGCCu -3'
miRNA:   3'- aGCCGU-GUUCGcGCGaGUGUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 10523 0.66 0.964418
Target:  5'- gCGGCguACcuGCGCGCcCGC---GGCCg -3'
miRNA:   3'- aGCCG--UGuuCGCGCGaGUGuuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 12179 0.68 0.899402
Target:  5'- gCGGCgaGCGAGCGCGCagcggaagaccUCggugccgGCGGUGGCg -3'
miRNA:   3'- aGCCG--UGUUCGCGCG-----------AG-------UGUUAUCGg -5'
2678 3' -53.3 NC_001491.2 + 12551 0.69 0.879302
Target:  5'- -gGGCGCGggAGCGCGCgagCGCc---GCCu -3'
miRNA:   3'- agCCGUGU--UCGCGCGa--GUGuuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 24679 0.73 0.676841
Target:  5'- gCGGCGCucGCGCGCUCcCGc--GCCc -3'
miRNA:   3'- aGCCGUGuuCGCGCGAGuGUuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 25037 0.73 0.657018
Target:  5'- cCGGCACcgaggucuuccgcuGCGCGCUCGCuc--GCCg -3'
miRNA:   3'- aGCCGUGuu------------CGCGCGAGUGuuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 25477 0.7 0.814262
Target:  5'- gCGG-ACGAGCGCuaUUACAuaagGGCCg -3'
miRNA:   3'- aGCCgUGUUCGCGcgAGUGUua--UCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.