miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2678 3' -53.3 NC_001491.2 + 26705 0.7 0.848424
Target:  5'- gCGGcCGCGGGCGCGCagguacgcCGCGGcGGCUg -3'
miRNA:   3'- aGCC-GUGUUCGCGCGa-------GUGUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 26852 0.7 0.848424
Target:  5'- cCGcGCACAcGCGCGCUCguacaucugcggGCGcgAGCa -3'
miRNA:   3'- aGC-CGUGUuCGCGCGAG------------UGUuaUCGg -5'
2678 3' -53.3 NC_001491.2 + 27113 0.68 0.899402
Target:  5'- cCGGCGCcgcuccgGAGCGCGUcCGCu---GCCu -3'
miRNA:   3'- aGCCGUG-------UUCGCGCGaGUGuuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 28594 0.66 0.957195
Target:  5'- -aGGUACGGGCGCaggGCcCGCGgggAUAGCg -3'
miRNA:   3'- agCCGUGUUCGCG---CGaGUGU---UAUCGg -5'
2678 3' -53.3 NC_001491.2 + 30078 0.67 0.929763
Target:  5'- cCGGCGCGuGUGUGUauagcgUCACAucGUGGCg -3'
miRNA:   3'- aGCCGUGUuCGCGCG------AGUGU--UAUCGg -5'
2678 3' -53.3 NC_001491.2 + 32631 0.71 0.796107
Target:  5'- cUGGCGgGAGCGuCGaagCGCAAgcgGGCCa -3'
miRNA:   3'- aGCCGUgUUCGC-GCga-GUGUUa--UCGG- -5'
2678 3' -53.3 NC_001491.2 + 33218 0.68 0.906497
Target:  5'- gCGGC-CGGGaaCGCGCUCugGGcccuGCCa -3'
miRNA:   3'- aGCCGuGUUC--GCGCGAGugUUau--CGG- -5'
2678 3' -53.3 NC_001491.2 + 33820 0.69 0.871914
Target:  5'- -gGGCuccgACGAGCuGCGcCUCGCGGUGcgcGCCg -3'
miRNA:   3'- agCCG----UGUUCG-CGC-GAGUGUUAU---CGG- -5'
2678 3' -53.3 NC_001491.2 + 33875 0.66 0.953233
Target:  5'- gUGGCGCcgcuGGUGCGCU-ACAAc-GCCg -3'
miRNA:   3'- aGCCGUGu---UCGCGCGAgUGUUauCGG- -5'
2678 3' -53.3 NC_001491.2 + 34181 0.66 0.967689
Target:  5'- gCGGCGgAGGCGCcgggGCU-ACGAccGCCa -3'
miRNA:   3'- aGCCGUgUUCGCG----CGAgUGUUauCGG- -5'
2678 3' -53.3 NC_001491.2 + 34379 0.68 0.912687
Target:  5'- gCGGCA--AGCgGCGCUC-CGAgccccuggAGCCg -3'
miRNA:   3'- aGCCGUguUCG-CGCGAGuGUUa-------UCGG- -5'
2678 3' -53.3 NC_001491.2 + 39051 0.67 0.944586
Target:  5'- gUCGGCGC-AGCGCcagGCUgAgAAgacGCCa -3'
miRNA:   3'- -AGCCGUGuUCGCG---CGAgUgUUau-CGG- -5'
2678 3' -53.3 NC_001491.2 + 47119 0.66 0.970741
Target:  5'- cCGGUGCAcgccccAGCagGCGCUC-CAG-AGCCc -3'
miRNA:   3'- aGCCGUGU------UCG--CGCGAGuGUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 48382 0.7 0.848424
Target:  5'- gCGGCuCAAGCGCGCccccggCGCGAccGUCc -3'
miRNA:   3'- aGCCGuGUUCGCGCGa-----GUGUUauCGG- -5'
2678 3' -53.3 NC_001491.2 + 50480 0.73 0.676841
Target:  5'- -aGGCACGGGUGCuGCccaacuaCAUGAUGGCCa -3'
miRNA:   3'- agCCGUGUUCGCG-CGa------GUGUUAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 51189 0.7 0.848424
Target:  5'- cUCGGCAaAAGCGCcggcuaccagcuGUUCGCA--GGCCc -3'
miRNA:   3'- -AGCCGUgUUCGCG------------CGAGUGUuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 53186 0.66 0.967689
Target:  5'- gCGGCAuCAAGCGgaGuCUUGCAGguGCCa -3'
miRNA:   3'- aGCCGU-GUUCGCg-C-GAGUGUUauCGG- -5'
2678 3' -53.3 NC_001491.2 + 53893 0.7 0.848424
Target:  5'- -aGGCGCAGGCagGCGCcCAgGAccGCCa -3'
miRNA:   3'- agCCGUGUUCG--CGCGaGUgUUauCGG- -5'
2678 3' -53.3 NC_001491.2 + 57998 0.66 0.957195
Target:  5'- gCGGUguuucaGCAAGUugGCGUaCGCcGUAGCCa -3'
miRNA:   3'- aGCCG------UGUUCG--CGCGaGUGuUAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 58432 0.66 0.964079
Target:  5'- gCGGCcCGAGUGCcccccauuucaugGUagaCGCGGUAGCCa -3'
miRNA:   3'- aGCCGuGUUCGCG-------------CGa--GUGUUAUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.