miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2678 3' -53.3 NC_001491.2 + 62235 0.66 0.970741
Target:  5'- aUCGaaaaGCACAAuCGUGUUCGCAucUAGUCa -3'
miRNA:   3'- -AGC----CGUGUUcGCGCGAGUGUu-AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 65400 1.12 0.003093
Target:  5'- gUCGGCACAAGCGCGCUCACAAUAGCCc -3'
miRNA:   3'- -AGCCGUGUUCGCGCGAGUGUUAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 69550 0.66 0.970445
Target:  5'- cUCGGgGCAGGCaaagagaGCGUUgACAggGGCg -3'
miRNA:   3'- -AGCCgUGUUCG-------CGCGAgUGUuaUCGg -5'
2678 3' -53.3 NC_001491.2 + 69836 0.69 0.879302
Target:  5'- uUUGGCACuagguGGCGUggGUUCACgGAUGGCg -3'
miRNA:   3'- -AGCCGUGu----UCGCG--CGAGUG-UUAUCGg -5'
2678 3' -53.3 NC_001491.2 + 79644 0.71 0.796107
Target:  5'- cUGGCGCGGGUGCGCagucuUCGCAcguGCUc -3'
miRNA:   3'- aGCCGUGUUCGCGCG-----AGUGUuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 80422 0.68 0.918629
Target:  5'- aCGGCACuGGGCGUGuCUC----UGGCCu -3'
miRNA:   3'- aGCCGUG-UUCGCGC-GAGuguuAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 83605 0.7 0.848424
Target:  5'- -aGGCACAAuCGCGCUUGgGGgacgcGGCCa -3'
miRNA:   3'- agCCGUGUUcGCGCGAGUgUUa----UCGG- -5'
2678 3' -53.3 NC_001491.2 + 84216 0.66 0.970741
Target:  5'- -aGGCACcuccauacugGAGCGUGCcaCACAGU-GCUa -3'
miRNA:   3'- agCCGUG----------UUCGCGCGa-GUGUUAuCGG- -5'
2678 3' -53.3 NC_001491.2 + 95888 0.68 0.923763
Target:  5'- cCGGCACccacggaGAGCGUGUUCAacuucGCCc -3'
miRNA:   3'- aGCCGUG-------UUCGCGCGAGUguuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 100424 0.77 0.480798
Target:  5'- aUCGGCcCGAGCcCGCUCGCAgcaugucAUAGUCg -3'
miRNA:   3'- -AGCCGuGUUCGcGCGAGUGU-------UAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 102778 0.73 0.687223
Target:  5'- -gGGUGCGuuGCGCGCUCcaGCAAacauuUAGCCa -3'
miRNA:   3'- agCCGUGUu-CGCGCGAG--UGUU-----AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 104972 0.71 0.805267
Target:  5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3'
miRNA:   3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 105005 0.71 0.805267
Target:  5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3'
miRNA:   3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 105038 0.71 0.805267
Target:  5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3'
miRNA:   3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 105071 0.71 0.805267
Target:  5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3'
miRNA:   3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 105104 0.71 0.805267
Target:  5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3'
miRNA:   3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 109645 0.67 0.939894
Target:  5'- aCGGCACGuGCGUuuGC-CGCcagGGCCu -3'
miRNA:   3'- aGCCGUGUuCGCG--CGaGUGuuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 110715 0.66 0.957195
Target:  5'- gCGGCACGcuGuCGCGC-CGaguUGGCCa -3'
miRNA:   3'- aGCCGUGUu-C-GCGCGaGUguuAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 113201 0.68 0.906497
Target:  5'- gCaGCAU-AGCGCGUUCGCAGaguUGGCg -3'
miRNA:   3'- aGcCGUGuUCGCGCGAGUGUU---AUCGg -5'
2678 3' -53.3 NC_001491.2 + 123321 0.71 0.786791
Target:  5'- -gGGCuccauCAAGCGCGCUCcagcGCGuggAGCUa -3'
miRNA:   3'- agCCGu----GUUCGCGCGAG----UGUua-UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.