miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2678 3' -53.3 NC_001491.2 + 146692 0.66 0.956422
Target:  5'- gCGGUACAcccAGCGacggugcguggaGCUCugGGUcuGGCCc -3'
miRNA:   3'- aGCCGUGU---UCGCg-----------CGAGugUUA--UCGG- -5'
2678 3' -53.3 NC_001491.2 + 142323 0.66 0.964418
Target:  5'- aUCGaCACGGGCGUuuaCUCGCAc-GGCCg -3'
miRNA:   3'- -AGCcGUGUUCGCGc--GAGUGUuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 139643 0.67 0.944586
Target:  5'- -gGGCAgAAGCGCaUUgACGGcAGCCa -3'
miRNA:   3'- agCCGUgUUCGCGcGAgUGUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 137042 0.66 0.970741
Target:  5'- -aGGCG-AGGCGCGCUguuugggagCGCAGUccuguuGCCg -3'
miRNA:   3'- agCCGUgUUCGCGCGA---------GUGUUAu-----CGG- -5'
2678 3' -53.3 NC_001491.2 + 135917 0.73 0.666421
Target:  5'- -aGGUaguGCAAuaGCGCUaCGCAAUAGCCc -3'
miRNA:   3'- agCCG---UGUUcgCGCGA-GUGUUAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 132020 0.68 0.924321
Target:  5'- gUCGGUAUaugGAGCgGCGCUacgacCGAUAGCa -3'
miRNA:   3'- -AGCCGUG---UUCG-CGCGAgu---GUUAUCGg -5'
2678 3' -53.3 NC_001491.2 + 130757 0.7 0.840174
Target:  5'- -aGGCGCcAGUGCGCUuagaCGCGAUAGa- -3'
miRNA:   3'- agCCGUGuUCGCGCGA----GUGUUAUCgg -5'
2678 3' -53.3 NC_001491.2 + 128563 0.66 0.960922
Target:  5'- gCGGCACuGGCGCuggucguuCUCAUcacAGCCg -3'
miRNA:   3'- aGCCGUGuUCGCGc-------GAGUGuuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 128157 0.66 0.970741
Target:  5'- cUGGUACAGGgaCGaaguaucauuUGCUCGCA-UAGCCa -3'
miRNA:   3'- aGCCGUGUUC--GC----------GCGAGUGUuAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 123321 0.71 0.786791
Target:  5'- -gGGCuccauCAAGCGCGCUCcagcGCGuggAGCUa -3'
miRNA:   3'- agCCGu----GUUCGCGCGAG----UGUua-UCGG- -5'
2678 3' -53.3 NC_001491.2 + 113201 0.68 0.906497
Target:  5'- gCaGCAU-AGCGCGUUCGCAGaguUGGCg -3'
miRNA:   3'- aGcCGUGuUCGCGCGAGUGUU---AUCGg -5'
2678 3' -53.3 NC_001491.2 + 110715 0.66 0.957195
Target:  5'- gCGGCACGcuGuCGCGC-CGaguUGGCCa -3'
miRNA:   3'- aGCCGUGUu-C-GCGCGaGUguuAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 109645 0.67 0.939894
Target:  5'- aCGGCACGuGCGUuuGC-CGCcagGGCCu -3'
miRNA:   3'- aGCCGUGUuCGCG--CGaGUGuuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 105104 0.71 0.805267
Target:  5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3'
miRNA:   3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 105071 0.71 0.805267
Target:  5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3'
miRNA:   3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 105038 0.71 0.805267
Target:  5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3'
miRNA:   3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 105005 0.71 0.805267
Target:  5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3'
miRNA:   3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 104972 0.71 0.805267
Target:  5'- gCGGCGgGGGC-CGC-CGCAGauuUGGCCg -3'
miRNA:   3'- aGCCGUgUUCGcGCGaGUGUU---AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 102778 0.73 0.687223
Target:  5'- -gGGUGCGuuGCGCGCUCcaGCAAacauuUAGCCa -3'
miRNA:   3'- agCCGUGUu-CGCGCGAG--UGUU-----AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 100424 0.77 0.480798
Target:  5'- aUCGGCcCGAGCcCGCUCGCAgcaugucAUAGUCg -3'
miRNA:   3'- -AGCCGuGUUCGcGCGAGUGU-------UAUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.