miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2678 3' -53.3 NC_001491.2 + 95888 0.68 0.923763
Target:  5'- cCGGCACccacggaGAGCGUGUUCAacuucGCCc -3'
miRNA:   3'- aGCCGUG-------UUCGCGCGAGUguuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 84216 0.66 0.970741
Target:  5'- -aGGCACcuccauacugGAGCGUGCcaCACAGU-GCUa -3'
miRNA:   3'- agCCGUG----------UUCGCGCGa-GUGUUAuCGG- -5'
2678 3' -53.3 NC_001491.2 + 83605 0.7 0.848424
Target:  5'- -aGGCACAAuCGCGCUUGgGGgacgcGGCCa -3'
miRNA:   3'- agCCGUGUUcGCGCGAGUgUUa----UCGG- -5'
2678 3' -53.3 NC_001491.2 + 80422 0.68 0.918629
Target:  5'- aCGGCACuGGGCGUGuCUC----UGGCCu -3'
miRNA:   3'- aGCCGUG-UUCGCGC-GAGuguuAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 79644 0.71 0.796107
Target:  5'- cUGGCGCGGGUGCGCagucuUCGCAcguGCUc -3'
miRNA:   3'- aGCCGUGUUCGCGCG-----AGUGUuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 69836 0.69 0.879302
Target:  5'- uUUGGCACuagguGGCGUggGUUCACgGAUGGCg -3'
miRNA:   3'- -AGCCGUGu----UCGCG--CGAGUG-UUAUCGg -5'
2678 3' -53.3 NC_001491.2 + 69550 0.66 0.970445
Target:  5'- cUCGGgGCAGGCaaagagaGCGUUgACAggGGCg -3'
miRNA:   3'- -AGCCgUGUUCG-------CGCGAgUGUuaUCGg -5'
2678 3' -53.3 NC_001491.2 + 65400 1.12 0.003093
Target:  5'- gUCGGCACAAGCGCGCUCACAAUAGCCc -3'
miRNA:   3'- -AGCCGUGUUCGCGCGAGUGUUAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 62235 0.66 0.970741
Target:  5'- aUCGaaaaGCACAAuCGUGUUCGCAucUAGUCa -3'
miRNA:   3'- -AGC----CGUGUUcGCGCGAGUGUu-AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 58432 0.66 0.964079
Target:  5'- gCGGCcCGAGUGCcccccauuucaugGUagaCGCGGUAGCCa -3'
miRNA:   3'- aGCCGuGUUCGCG-------------CGa--GUGUUAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 57998 0.66 0.957195
Target:  5'- gCGGUguuucaGCAAGUugGCGUaCGCcGUAGCCa -3'
miRNA:   3'- aGCCG------UGUUCG--CGCGaGUGuUAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 53893 0.7 0.848424
Target:  5'- -aGGCGCAGGCagGCGCcCAgGAccGCCa -3'
miRNA:   3'- agCCGUGUUCG--CGCGaGUgUUauCGG- -5'
2678 3' -53.3 NC_001491.2 + 53186 0.66 0.967689
Target:  5'- gCGGCAuCAAGCGgaGuCUUGCAGguGCCa -3'
miRNA:   3'- aGCCGU-GUUCGCg-C-GAGUGUUauCGG- -5'
2678 3' -53.3 NC_001491.2 + 51189 0.7 0.848424
Target:  5'- cUCGGCAaAAGCGCcggcuaccagcuGUUCGCA--GGCCc -3'
miRNA:   3'- -AGCCGUgUUCGCG------------CGAGUGUuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 50480 0.73 0.676841
Target:  5'- -aGGCACGGGUGCuGCccaacuaCAUGAUGGCCa -3'
miRNA:   3'- agCCGUGUUCGCG-CGa------GUGUUAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 48382 0.7 0.848424
Target:  5'- gCGGCuCAAGCGCGCccccggCGCGAccGUCc -3'
miRNA:   3'- aGCCGuGUUCGCGCGa-----GUGUUauCGG- -5'
2678 3' -53.3 NC_001491.2 + 47119 0.66 0.970741
Target:  5'- cCGGUGCAcgccccAGCagGCGCUC-CAG-AGCCc -3'
miRNA:   3'- aGCCGUGU------UCG--CGCGAGuGUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 39051 0.67 0.944586
Target:  5'- gUCGGCGC-AGCGCcagGCUgAgAAgacGCCa -3'
miRNA:   3'- -AGCCGUGuUCGCG---CGAgUgUUau-CGG- -5'
2678 3' -53.3 NC_001491.2 + 34379 0.68 0.912687
Target:  5'- gCGGCA--AGCgGCGCUC-CGAgccccuggAGCCg -3'
miRNA:   3'- aGCCGUguUCG-CGCGAGuGUUa-------UCGG- -5'
2678 3' -53.3 NC_001491.2 + 34181 0.66 0.967689
Target:  5'- gCGGCGgAGGCGCcgggGCU-ACGAccGCCa -3'
miRNA:   3'- aGCCGUgUUCGCG----CGAgUGUUauCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.