miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2678 3' -53.3 NC_001491.2 + 33875 0.66 0.953233
Target:  5'- gUGGCGCcgcuGGUGCGCU-ACAAc-GCCg -3'
miRNA:   3'- aGCCGUGu---UCGCGCGAgUGUUauCGG- -5'
2678 3' -53.3 NC_001491.2 + 33820 0.69 0.871914
Target:  5'- -gGGCuccgACGAGCuGCGcCUCGCGGUGcgcGCCg -3'
miRNA:   3'- agCCG----UGUUCG-CGC-GAGUGUUAU---CGG- -5'
2678 3' -53.3 NC_001491.2 + 33218 0.68 0.906497
Target:  5'- gCGGC-CGGGaaCGCGCUCugGGcccuGCCa -3'
miRNA:   3'- aGCCGuGUUC--GCGCGAGugUUau--CGG- -5'
2678 3' -53.3 NC_001491.2 + 32631 0.71 0.796107
Target:  5'- cUGGCGgGAGCGuCGaagCGCAAgcgGGCCa -3'
miRNA:   3'- aGCCGUgUUCGC-GCga-GUGUUa--UCGG- -5'
2678 3' -53.3 NC_001491.2 + 30078 0.67 0.929763
Target:  5'- cCGGCGCGuGUGUGUauagcgUCACAucGUGGCg -3'
miRNA:   3'- aGCCGUGUuCGCGCG------AGUGU--UAUCGg -5'
2678 3' -53.3 NC_001491.2 + 28594 0.66 0.957195
Target:  5'- -aGGUACGGGCGCaggGCcCGCGgggAUAGCg -3'
miRNA:   3'- agCCGUGUUCGCG---CGaGUGU---UAUCGg -5'
2678 3' -53.3 NC_001491.2 + 27113 0.68 0.899402
Target:  5'- cCGGCGCcgcuccgGAGCGCGUcCGCu---GCCu -3'
miRNA:   3'- aGCCGUG-------UUCGCGCGaGUGuuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 26852 0.7 0.848424
Target:  5'- cCGcGCACAcGCGCGCUCguacaucugcggGCGcgAGCa -3'
miRNA:   3'- aGC-CGUGUuCGCGCGAG------------UGUuaUCGg -5'
2678 3' -53.3 NC_001491.2 + 26705 0.7 0.848424
Target:  5'- gCGGcCGCGGGCGCGCagguacgcCGCGGcGGCUg -3'
miRNA:   3'- aGCC-GUGUUCGCGCGa-------GUGUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 25477 0.7 0.814262
Target:  5'- gCGG-ACGAGCGCuaUUACAuaagGGCCg -3'
miRNA:   3'- aGCCgUGUUCGCGcgAGUGUua--UCGG- -5'
2678 3' -53.3 NC_001491.2 + 25037 0.73 0.657018
Target:  5'- cCGGCACcgaggucuuccgcuGCGCGCUCGCuc--GCCg -3'
miRNA:   3'- aGCCGUGuu------------CGCGCGAGUGuuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 24679 0.73 0.676841
Target:  5'- gCGGCGCucGCGCGCUCcCGc--GCCc -3'
miRNA:   3'- aGCCGUGuuCGCGCGAGuGUuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 12551 0.69 0.879302
Target:  5'- -gGGCGCGggAGCGCGCgagCGCc---GCCu -3'
miRNA:   3'- agCCGUGU--UCGCGCGa--GUGuuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 12179 0.68 0.899402
Target:  5'- gCGGCgaGCGAGCGCGCagcggaagaccUCggugccgGCGGUGGCg -3'
miRNA:   3'- aGCCG--UGUUCGCGCG-----------AG-------UGUUAUCGg -5'
2678 3' -53.3 NC_001491.2 + 10523 0.66 0.964418
Target:  5'- gCGGCguACcuGCGCGCcCGC---GGCCg -3'
miRNA:   3'- aGCCG--UGuuCGCGCGaGUGuuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 10131 0.69 0.886458
Target:  5'- gCGGCGcCGGGC-CGCcCGCGGaGGCCu -3'
miRNA:   3'- aGCCGU-GUUCGcGCGaGUGUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 10040 0.66 0.953233
Target:  5'- gCGGCGCAcGCG-GuCUCGCu---GCCg -3'
miRNA:   3'- aGCCGUGUuCGCgC-GAGUGuuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 8934 0.67 0.929763
Target:  5'- cCGGUACGAGCaGCGgUUcCuggAGCCg -3'
miRNA:   3'- aGCCGUGUUCG-CGCgAGuGuuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 7756 0.66 0.957195
Target:  5'- gUUGGCACGGugccauGCGCGCUCcCGAgacggggGGUg -3'
miRNA:   3'- -AGCCGUGUU------CGCGCGAGuGUUa------UCGg -5'
2678 3' -53.3 NC_001491.2 + 4005 0.66 0.953233
Target:  5'- gUGGCAgggcccaGAGCGCGUUCcCGGccGCCa -3'
miRNA:   3'- aGCCGUg------UUCGCGCGAGuGUUauCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.