miRNA display CGI


Results 41 - 60 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2678 3' -53.3 NC_001491.2 + 69550 0.66 0.970445
Target:  5'- cUCGGgGCAGGCaaagagaGCGUUgACAggGGCg -3'
miRNA:   3'- -AGCCgUGUUCG-------CGCGAgUGUuaUCGg -5'
2678 3' -53.3 NC_001491.2 + 84216 0.66 0.970741
Target:  5'- -aGGCACcuccauacugGAGCGUGCcaCACAGU-GCUa -3'
miRNA:   3'- agCCGUG----------UUCGCGCGa-GUGUUAuCGG- -5'
2678 3' -53.3 NC_001491.2 + 137042 0.66 0.970741
Target:  5'- -aGGCG-AGGCGCGCUguuugggagCGCAGUccuguuGCCg -3'
miRNA:   3'- agCCGUgUUCGCGCGA---------GUGUUAu-----CGG- -5'
2678 3' -53.3 NC_001491.2 + 47119 0.66 0.970741
Target:  5'- cCGGUGCAcgccccAGCagGCGCUC-CAG-AGCCc -3'
miRNA:   3'- aGCCGUGU------UCG--CGCGAGuGUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 62235 0.66 0.970741
Target:  5'- aUCGaaaaGCACAAuCGUGUUCGCAucUAGUCa -3'
miRNA:   3'- -AGC----CGUGUUcGCGCGAGUGUu-AUCGG- -5'
2678 3' -53.3 NC_001491.2 + 7756 0.66 0.957195
Target:  5'- gUUGGCACGGugccauGCGCGCUCcCGAgacggggGGUg -3'
miRNA:   3'- -AGCCGUGUU------CGCGCGAGuGUUa------UCGg -5'
2678 3' -53.3 NC_001491.2 + 110715 0.66 0.957195
Target:  5'- gCGGCACGcuGuCGCGC-CGaguUGGCCa -3'
miRNA:   3'- aGCCGUGUu-C-GCGCGaGUguuAUCGG- -5'
2678 3' -53.3 NC_001491.2 + 2613 0.68 0.924321
Target:  5'- --cGCGCAAGC-CGCgUCGCug-GGCCg -3'
miRNA:   3'- agcCGUGUUCGcGCG-AGUGuuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 8934 0.67 0.929763
Target:  5'- cCGGUACGAGCaGCGgUUcCuggAGCCg -3'
miRNA:   3'- aGCCGUGUUCG-CGCgAGuGuuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 30078 0.67 0.929763
Target:  5'- cCGGCGCGuGUGUGUauagcgUCACAucGUGGCg -3'
miRNA:   3'- aGCCGUGUuCGCGCG------AGUGU--UAUCGg -5'
2678 3' -53.3 NC_001491.2 + 109645 0.67 0.939894
Target:  5'- aCGGCACGuGCGUuuGC-CGCcagGGCCu -3'
miRNA:   3'- aGCCGUGUuCGCG--CGaGUGuuaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 39051 0.67 0.944586
Target:  5'- gUCGGCGC-AGCGCcagGCUgAgAAgacGCCa -3'
miRNA:   3'- -AGCCGUGuUCGCG---CGAgUgUUau-CGG- -5'
2678 3' -53.3 NC_001491.2 + 139643 0.67 0.944586
Target:  5'- -gGGCAgAAGCGCaUUgACGGcAGCCa -3'
miRNA:   3'- agCCGUgUUCGCGcGAgUGUUaUCGG- -5'
2678 3' -53.3 NC_001491.2 + 1774 0.67 0.949031
Target:  5'- -gGGaaCGCGGGUGCGCUCGCc--GGCg -3'
miRNA:   3'- agCC--GUGUUCGCGCGAGUGuuaUCGg -5'
2678 3' -53.3 NC_001491.2 + 10040 0.66 0.953233
Target:  5'- gCGGCGCAcGCG-GuCUCGCu---GCCg -3'
miRNA:   3'- aGCCGUGUuCGCgC-GAGUGuuauCGG- -5'
2678 3' -53.3 NC_001491.2 + 4005 0.66 0.953233
Target:  5'- gUGGCAgggcccaGAGCGCGUUCcCGGccGCCa -3'
miRNA:   3'- aGCCGUg------UUCGCGCGAGuGUUauCGG- -5'
2678 3' -53.3 NC_001491.2 + 33875 0.66 0.953233
Target:  5'- gUGGCGCcgcuGGUGCGCU-ACAAc-GCCg -3'
miRNA:   3'- aGCCGUGu---UCGCGCGAgUGUUauCGG- -5'
2678 3' -53.3 NC_001491.2 + 146692 0.66 0.956422
Target:  5'- gCGGUACAcccAGCGacggugcguggaGCUCugGGUcuGGCCc -3'
miRNA:   3'- aGCCGUGU---UCGCg-----------CGAGugUUA--UCGG- -5'
2678 3' -53.3 NC_001491.2 + 28594 0.66 0.957195
Target:  5'- -aGGUACGGGCGCaggGCcCGCGgggAUAGCg -3'
miRNA:   3'- agCCGUGUUCGCG---CGaGUGU---UAUCGg -5'
2678 3' -53.3 NC_001491.2 + 57998 0.66 0.957195
Target:  5'- gCGGUguuucaGCAAGUugGCGUaCGCcGUAGCCa -3'
miRNA:   3'- aGCCG------UGUUCG--CGCGaGUGuUAUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.