Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2678 | 3' | -53.3 | NC_001491.2 | + | 69550 | 0.66 | 0.970445 |
Target: 5'- cUCGGgGCAGGCaaagagaGCGUUgACAggGGCg -3' miRNA: 3'- -AGCCgUGUUCG-------CGCGAgUGUuaUCGg -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 84216 | 0.66 | 0.970741 |
Target: 5'- -aGGCACcuccauacugGAGCGUGCcaCACAGU-GCUa -3' miRNA: 3'- agCCGUG----------UUCGCGCGa-GUGUUAuCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 137042 | 0.66 | 0.970741 |
Target: 5'- -aGGCG-AGGCGCGCUguuugggagCGCAGUccuguuGCCg -3' miRNA: 3'- agCCGUgUUCGCGCGA---------GUGUUAu-----CGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 47119 | 0.66 | 0.970741 |
Target: 5'- cCGGUGCAcgccccAGCagGCGCUC-CAG-AGCCc -3' miRNA: 3'- aGCCGUGU------UCG--CGCGAGuGUUaUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 62235 | 0.66 | 0.970741 |
Target: 5'- aUCGaaaaGCACAAuCGUGUUCGCAucUAGUCa -3' miRNA: 3'- -AGC----CGUGUUcGCGCGAGUGUu-AUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 7756 | 0.66 | 0.957195 |
Target: 5'- gUUGGCACGGugccauGCGCGCUCcCGAgacggggGGUg -3' miRNA: 3'- -AGCCGUGUU------CGCGCGAGuGUUa------UCGg -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 110715 | 0.66 | 0.957195 |
Target: 5'- gCGGCACGcuGuCGCGC-CGaguUGGCCa -3' miRNA: 3'- aGCCGUGUu-C-GCGCGaGUguuAUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 2613 | 0.68 | 0.924321 |
Target: 5'- --cGCGCAAGC-CGCgUCGCug-GGCCg -3' miRNA: 3'- agcCGUGUUCGcGCG-AGUGuuaUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 8934 | 0.67 | 0.929763 |
Target: 5'- cCGGUACGAGCaGCGgUUcCuggAGCCg -3' miRNA: 3'- aGCCGUGUUCG-CGCgAGuGuuaUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 30078 | 0.67 | 0.929763 |
Target: 5'- cCGGCGCGuGUGUGUauagcgUCACAucGUGGCg -3' miRNA: 3'- aGCCGUGUuCGCGCG------AGUGU--UAUCGg -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 109645 | 0.67 | 0.939894 |
Target: 5'- aCGGCACGuGCGUuuGC-CGCcagGGCCu -3' miRNA: 3'- aGCCGUGUuCGCG--CGaGUGuuaUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 39051 | 0.67 | 0.944586 |
Target: 5'- gUCGGCGC-AGCGCcagGCUgAgAAgacGCCa -3' miRNA: 3'- -AGCCGUGuUCGCG---CGAgUgUUau-CGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 139643 | 0.67 | 0.944586 |
Target: 5'- -gGGCAgAAGCGCaUUgACGGcAGCCa -3' miRNA: 3'- agCCGUgUUCGCGcGAgUGUUaUCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 1774 | 0.67 | 0.949031 |
Target: 5'- -gGGaaCGCGGGUGCGCUCGCc--GGCg -3' miRNA: 3'- agCC--GUGUUCGCGCGAGUGuuaUCGg -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 10040 | 0.66 | 0.953233 |
Target: 5'- gCGGCGCAcGCG-GuCUCGCu---GCCg -3' miRNA: 3'- aGCCGUGUuCGCgC-GAGUGuuauCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 4005 | 0.66 | 0.953233 |
Target: 5'- gUGGCAgggcccaGAGCGCGUUCcCGGccGCCa -3' miRNA: 3'- aGCCGUg------UUCGCGCGAGuGUUauCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 33875 | 0.66 | 0.953233 |
Target: 5'- gUGGCGCcgcuGGUGCGCU-ACAAc-GCCg -3' miRNA: 3'- aGCCGUGu---UCGCGCGAgUGUUauCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 146692 | 0.66 | 0.956422 |
Target: 5'- gCGGUACAcccAGCGacggugcguggaGCUCugGGUcuGGCCc -3' miRNA: 3'- aGCCGUGU---UCGCg-----------CGAGugUUA--UCGG- -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 28594 | 0.66 | 0.957195 |
Target: 5'- -aGGUACGGGCGCaggGCcCGCGgggAUAGCg -3' miRNA: 3'- agCCGUGUUCGCG---CGaGUGU---UAUCGg -5' |
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2678 | 3' | -53.3 | NC_001491.2 | + | 57998 | 0.66 | 0.957195 |
Target: 5'- gCGGUguuucaGCAAGUugGCGUaCGCcGUAGCCa -3' miRNA: 3'- aGCCG------UGUUCG--CGCGaGUGuUAUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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