miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26780 3' -59.6 NC_005808.1 + 26537 0.66 0.465739
Target:  5'- gCCGcGCGCGGCgGCCaCgUGcGCGAAcuggCCu -3'
miRNA:   3'- -GGC-CGUGCCGgUGGcG-AC-CGCUUa---GG- -5'
26780 3' -59.6 NC_005808.1 + 4275 0.66 0.465739
Target:  5'- gCCGGCAUGGUgaugGCCGUgucGGCGGu--- -3'
miRNA:   3'- -GGCCGUGCCGg---UGGCGa--CCGCUuagg -5'
26780 3' -59.6 NC_005808.1 + 40914 0.66 0.465739
Target:  5'- uUGGUAUGGCuCGCC----GCGAGUCCa -3'
miRNA:   3'- gGCCGUGCCG-GUGGcgacCGCUUAGG- -5'
26780 3' -59.6 NC_005808.1 + 19500 0.66 0.465739
Target:  5'- gCCGuGgGC-GCCGCCGUUGGCG--UCg -3'
miRNA:   3'- -GGC-CgUGcCGGUGGCGACCGCuuAGg -5'
26780 3' -59.6 NC_005808.1 + 35179 0.66 0.459877
Target:  5'- gCUGGC-CGGCCAuCCggugcccggcuucaaGCUGGUGGAa-- -3'
miRNA:   3'- -GGCCGuGCCGGU-GG---------------CGACCGCUUagg -5'
26780 3' -59.6 NC_005808.1 + 40669 0.66 0.455991
Target:  5'- aUCGGaUAUGGCCcacccacaaGCUGCUGcGCaAGUCCu -3'
miRNA:   3'- -GGCC-GUGCCGG---------UGGCGAC-CGcUUAGG- -5'
26780 3' -59.6 NC_005808.1 + 13438 0.66 0.455991
Target:  5'- aCGGCA-GGcCCGCCaGCUuGGCGg--CCu -3'
miRNA:   3'- gGCCGUgCC-GGUGG-CGA-CCGCuuaGG- -5'
26780 3' -59.6 NC_005808.1 + 22372 0.66 0.455991
Target:  5'- -aGGCACccaaGGCCaacagccgGCCGCgGGCGcugCCa -3'
miRNA:   3'- ggCCGUG----CCGG--------UGGCGaCCGCuuaGG- -5'
26780 3' -59.6 NC_005808.1 + 10044 0.66 0.446353
Target:  5'- gUCGGaGCGG-CAUCGCcGGCGGcagcAUCCu -3'
miRNA:   3'- -GGCCgUGCCgGUGGCGaCCGCU----UAGG- -5'
26780 3' -59.6 NC_005808.1 + 15166 0.66 0.446353
Target:  5'- -gGGCcuGCGGCCGCCGg-GcGCGGugcgCCa -3'
miRNA:   3'- ggCCG--UGCCGGUGGCgaC-CGCUua--GG- -5'
26780 3' -59.6 NC_005808.1 + 32915 0.66 0.446353
Target:  5'- gCGGcCACGGCCugCaC-GGCGGcuGUUCg -3'
miRNA:   3'- gGCC-GUGCCGGugGcGaCCGCU--UAGG- -5'
26780 3' -59.6 NC_005808.1 + 34192 0.66 0.446353
Target:  5'- -aGcGCACGGCCcugGCCGaCUGGCuacgcagCCa -3'
miRNA:   3'- ggC-CGUGCCGG---UGGC-GACCGcuua---GG- -5'
26780 3' -59.6 NC_005808.1 + 42411 0.66 0.446353
Target:  5'- cCCGGCagcgugACGGUgcccagcgaCACCGg-GGCGcAUCCg -3'
miRNA:   3'- -GGCCG------UGCCG---------GUGGCgaCCGCuUAGG- -5'
26780 3' -59.6 NC_005808.1 + 26256 0.66 0.446353
Target:  5'- -aGGCACGGgCAcCCGCcGGCcuGGUCg -3'
miRNA:   3'- ggCCGUGCCgGU-GGCGaCCGc-UUAGg -5'
26780 3' -59.6 NC_005808.1 + 6093 0.66 0.446353
Target:  5'- gUCGaGCGCGGCCuugcgcaugUCGCaacGGUGAAUCUu -3'
miRNA:   3'- -GGC-CGUGCCGGu--------GGCGa--CCGCUUAGG- -5'
26780 3' -59.6 NC_005808.1 + 32115 0.66 0.436831
Target:  5'- aCGGCccguuCGGgCCGgUGCUGcGCGAcuUCCa -3'
miRNA:   3'- gGCCGu----GCC-GGUgGCGAC-CGCUu-AGG- -5'
26780 3' -59.6 NC_005808.1 + 34902 0.66 0.436831
Target:  5'- aUCGGCAagcCGGCCGCCGa-GGUcaagCCg -3'
miRNA:   3'- -GGCCGU---GCCGGUGGCgaCCGcuuaGG- -5'
26780 3' -59.6 NC_005808.1 + 1573 0.66 0.436831
Target:  5'- -gGGCAuauccuuguagUGGCCGCCGCcuuccuggUGGuCGAGUgCg -3'
miRNA:   3'- ggCCGU-----------GCCGGUGGCG--------ACC-GCUUAgG- -5'
26780 3' -59.6 NC_005808.1 + 20283 0.66 0.436831
Target:  5'- uUCGGCACGGCCAgCagcaucguGCUGcccgacuuCGAcgCCg -3'
miRNA:   3'- -GGCCGUGCCGGUgG--------CGACc-------GCUuaGG- -5'
26780 3' -59.6 NC_005808.1 + 26320 0.66 0.436831
Target:  5'- -aGGCACGGUcuugacgcgCACCGCgaacUGGCcGcgCCg -3'
miRNA:   3'- ggCCGUGCCG---------GUGGCG----ACCGcUuaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.