Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26781 | 5' | -54 | NC_005808.1 | + | 14237 | 0.66 | 0.738546 |
Target: 5'- cGCCAAGgaaaccauccgcgcGCUGCC-CGACGA-GGCCAa -3' miRNA: 3'- -UGGUUCa-------------UGGCGGaGCUGCUgUUGGU- -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 28285 | 0.66 | 0.734227 |
Target: 5'- aGCCAAGgcGCgCGCCaguucagcaaCGACGugGGCCGc -3' miRNA: 3'- -UGGUUCa-UG-GCGGa---------GCUGCugUUGGU- -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 708 | 0.66 | 0.734227 |
Target: 5'- cCCAAGaUACCGCCcaggauaggGGCGGCuuuGCCGa -3' miRNA: 3'- uGGUUC-AUGGCGGag-------CUGCUGu--UGGU- -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 35744 | 0.66 | 0.734227 |
Target: 5'- gGCCAAG-ACCGUCaaCGGCGAgGGCa- -3' miRNA: 3'- -UGGUUCaUGGCGGa-GCUGCUgUUGgu -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 38413 | 0.66 | 0.734227 |
Target: 5'- gGCCAAcaugcCCGCCaUCGA-GGCGGCCGg -3' miRNA: 3'- -UGGUUcau--GGCGG-AGCUgCUGUUGGU- -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 4329 | 0.66 | 0.723357 |
Target: 5'- uCCAcgauGGUGCCaGCCUUGAUGcUGGCCGu -3' miRNA: 3'- uGGU----UCAUGG-CGGAGCUGCuGUUGGU- -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 36295 | 0.66 | 0.723357 |
Target: 5'- cGCaAAGcUGCCGUCaaugUCGugGGCGACCu -3' miRNA: 3'- -UGgUUC-AUGGCGG----AGCugCUGUUGGu -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 13769 | 0.66 | 0.723357 |
Target: 5'- -gCAAGUccgGCCGCaaccCGACGACGGCg- -3' miRNA: 3'- ugGUUCA---UGGCGga--GCUGCUGUUGgu -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 18997 | 0.66 | 0.723357 |
Target: 5'- uACCGGGgGCUGCa-CGcAUGACGGCCAu -3' miRNA: 3'- -UGGUUCaUGGCGgaGC-UGCUGUUGGU- -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 13845 | 0.66 | 0.723357 |
Target: 5'- cGCCGAGaagcgcACCGCgCUgGACGAUG-CCAa -3' miRNA: 3'- -UGGUUCa-----UGGCG-GAgCUGCUGUuGGU- -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 32423 | 0.66 | 0.723357 |
Target: 5'- cGCCAcGU-CUGCCaaGACGACGGCa- -3' miRNA: 3'- -UGGUuCAuGGCGGagCUGCUGUUGgu -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 4436 | 0.66 | 0.723357 |
Target: 5'- cGCCAGGgggaaGCCGCCagCGGUGGCA-CCGu -3' miRNA: 3'- -UGGUUCa----UGGCGGa-GCUGCUGUuGGU- -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 17394 | 0.66 | 0.712392 |
Target: 5'- cGCCGAcGcACCGCUUCGauucaGCGGCGcCCAc -3' miRNA: 3'- -UGGUU-CaUGGCGGAGC-----UGCUGUuGGU- -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 19512 | 0.66 | 0.709085 |
Target: 5'- aACCGuggucuuGUGCUcggugaaaccguugGCCUCGAUGACggUCAu -3' miRNA: 3'- -UGGUu------CAUGG--------------CGGAGCUGCUGuuGGU- -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 17064 | 0.66 | 0.701343 |
Target: 5'- -aCGGGggcGCUGCCggCGGCGGCAaaACCGa -3' miRNA: 3'- ugGUUCa--UGGCGGa-GCUGCUGU--UGGU- -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 16346 | 0.66 | 0.690223 |
Target: 5'- gGCCGgcgGGUGCCcguGCCuUCGGCGACGcGCgCAa -3' miRNA: 3'- -UGGU---UCAUGG---CGG-AGCUGCUGU-UG-GU- -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 728 | 0.67 | 0.667819 |
Target: 5'- gGCCAAGUcgAgCGCCU-GGCgGAUGACCGa -3' miRNA: 3'- -UGGUUCA--UgGCGGAgCUG-CUGUUGGU- -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 4591 | 0.67 | 0.667819 |
Target: 5'- cGCCAGGcgaggaacUGCUcgGCCUCGGCGAUGAUg- -3' miRNA: 3'- -UGGUUC--------AUGG--CGGAGCUGCUGUUGgu -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 17461 | 0.67 | 0.667819 |
Target: 5'- gGCCAGGUGCCacgccaggGCCUgcacgaacagCGGCGAgAACUu -3' miRNA: 3'- -UGGUUCAUGG--------CGGA----------GCUGCUgUUGGu -5' |
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26781 | 5' | -54 | NC_005808.1 | + | 12096 | 0.67 | 0.656558 |
Target: 5'- cACCucGUGCUcaaCCUCGACGACuuUCAg -3' miRNA: 3'- -UGGuuCAUGGc--GGAGCUGCUGuuGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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