miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26781 5' -54 NC_005808.1 + 14237 0.66 0.738546
Target:  5'- cGCCAAGgaaaccauccgcgcGCUGCC-CGACGA-GGCCAa -3'
miRNA:   3'- -UGGUUCa-------------UGGCGGaGCUGCUgUUGGU- -5'
26781 5' -54 NC_005808.1 + 38413 0.66 0.734227
Target:  5'- gGCCAAcaugcCCGCCaUCGA-GGCGGCCGg -3'
miRNA:   3'- -UGGUUcau--GGCGG-AGCUgCUGUUGGU- -5'
26781 5' -54 NC_005808.1 + 28285 0.66 0.734227
Target:  5'- aGCCAAGgcGCgCGCCaguucagcaaCGACGugGGCCGc -3'
miRNA:   3'- -UGGUUCa-UG-GCGGa---------GCUGCugUUGGU- -5'
26781 5' -54 NC_005808.1 + 708 0.66 0.734227
Target:  5'- cCCAAGaUACCGCCcaggauaggGGCGGCuuuGCCGa -3'
miRNA:   3'- uGGUUC-AUGGCGGag-------CUGCUGu--UGGU- -5'
26781 5' -54 NC_005808.1 + 35744 0.66 0.734227
Target:  5'- gGCCAAG-ACCGUCaaCGGCGAgGGCa- -3'
miRNA:   3'- -UGGUUCaUGGCGGa-GCUGCUgUUGgu -5'
26781 5' -54 NC_005808.1 + 36295 0.66 0.723357
Target:  5'- cGCaAAGcUGCCGUCaaugUCGugGGCGACCu -3'
miRNA:   3'- -UGgUUC-AUGGCGG----AGCugCUGUUGGu -5'
26781 5' -54 NC_005808.1 + 13845 0.66 0.723357
Target:  5'- cGCCGAGaagcgcACCGCgCUgGACGAUG-CCAa -3'
miRNA:   3'- -UGGUUCa-----UGGCG-GAgCUGCUGUuGGU- -5'
26781 5' -54 NC_005808.1 + 18997 0.66 0.723357
Target:  5'- uACCGGGgGCUGCa-CGcAUGACGGCCAu -3'
miRNA:   3'- -UGGUUCaUGGCGgaGC-UGCUGUUGGU- -5'
26781 5' -54 NC_005808.1 + 32423 0.66 0.723357
Target:  5'- cGCCAcGU-CUGCCaaGACGACGGCa- -3'
miRNA:   3'- -UGGUuCAuGGCGGagCUGCUGUUGgu -5'
26781 5' -54 NC_005808.1 + 4436 0.66 0.723357
Target:  5'- cGCCAGGgggaaGCCGCCagCGGUGGCA-CCGu -3'
miRNA:   3'- -UGGUUCa----UGGCGGa-GCUGCUGUuGGU- -5'
26781 5' -54 NC_005808.1 + 4329 0.66 0.723357
Target:  5'- uCCAcgauGGUGCCaGCCUUGAUGcUGGCCGu -3'
miRNA:   3'- uGGU----UCAUGG-CGGAGCUGCuGUUGGU- -5'
26781 5' -54 NC_005808.1 + 13769 0.66 0.723357
Target:  5'- -gCAAGUccgGCCGCaaccCGACGACGGCg- -3'
miRNA:   3'- ugGUUCA---UGGCGga--GCUGCUGUUGgu -5'
26781 5' -54 NC_005808.1 + 17394 0.66 0.712392
Target:  5'- cGCCGAcGcACCGCUUCGauucaGCGGCGcCCAc -3'
miRNA:   3'- -UGGUU-CaUGGCGGAGC-----UGCUGUuGGU- -5'
26781 5' -54 NC_005808.1 + 19512 0.66 0.709085
Target:  5'- aACCGuggucuuGUGCUcggugaaaccguugGCCUCGAUGACggUCAu -3'
miRNA:   3'- -UGGUu------CAUGG--------------CGGAGCUGCUGuuGGU- -5'
26781 5' -54 NC_005808.1 + 17064 0.66 0.701343
Target:  5'- -aCGGGggcGCUGCCggCGGCGGCAaaACCGa -3'
miRNA:   3'- ugGUUCa--UGGCGGa-GCUGCUGU--UGGU- -5'
26781 5' -54 NC_005808.1 + 16346 0.66 0.690223
Target:  5'- gGCCGgcgGGUGCCcguGCCuUCGGCGACGcGCgCAa -3'
miRNA:   3'- -UGGU---UCAUGG---CGG-AGCUGCUGU-UG-GU- -5'
26781 5' -54 NC_005808.1 + 4591 0.67 0.667819
Target:  5'- cGCCAGGcgaggaacUGCUcgGCCUCGGCGAUGAUg- -3'
miRNA:   3'- -UGGUUC--------AUGG--CGGAGCUGCUGUUGgu -5'
26781 5' -54 NC_005808.1 + 728 0.67 0.667819
Target:  5'- gGCCAAGUcgAgCGCCU-GGCgGAUGACCGa -3'
miRNA:   3'- -UGGUUCA--UgGCGGAgCUG-CUGUUGGU- -5'
26781 5' -54 NC_005808.1 + 17461 0.67 0.667819
Target:  5'- gGCCAGGUGCCacgccaggGCCUgcacgaacagCGGCGAgAACUu -3'
miRNA:   3'- -UGGUUCAUGG--------CGGA----------GCUGCUgUUGGu -5'
26781 5' -54 NC_005808.1 + 12096 0.67 0.656558
Target:  5'- cACCucGUGCUcaaCCUCGACGACuuUCAg -3'
miRNA:   3'- -UGGuuCAUGGc--GGAGCUGCUGuuGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.