miRNA display CGI


Results 41 - 55 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26783 3' -63 NC_005808.1 + 13020 0.66 0.243847
Target:  5'- gCGCCUGgG-CGCGGCCgACCUGaCGc -3'
miRNA:   3'- aGCGGAUgCgGUGCCGGgUGGGC-GUa -5'
26783 3' -63 NC_005808.1 + 39533 0.67 0.23713
Target:  5'- aUCGCCgaagugggGCGCauucuCGGCUCcuggauuGCCCGCGUg -3'
miRNA:   3'- -AGCGGa-------UGCGgu---GCCGGG-------UGGGCGUA- -5'
26783 3' -63 NC_005808.1 + 41980 0.75 0.061012
Target:  5'- aCGCCguguccacgGCGCUGCuGGCCgACCCGCAg -3'
miRNA:   3'- aGCGGa--------UGCGGUG-CCGGgUGGGCGUa -5'
26783 3' -63 NC_005808.1 + 16540 0.71 0.106806
Target:  5'- uUCGCCgaGCGCauggaGCGcGCCCGCCgCGCGg -3'
miRNA:   3'- -AGCGGa-UGCGg----UGC-CGGGUGG-GCGUa -5'
26783 3' -63 NC_005808.1 + 19073 0.7 0.144256
Target:  5'- cCGCgUGCGCCGCcuggaaGGCgCGCUCGCGg -3'
miRNA:   3'- aGCGgAUGCGGUG------CCGgGUGGGCGUa -5'
26783 3' -63 NC_005808.1 + 29285 0.7 0.148201
Target:  5'- -aGCCUACGCCGCcuacaacgccGGCCCcggcGCgCUGCAa -3'
miRNA:   3'- agCGGAUGCGGUG----------CCGGG----UG-GGCGUa -5'
26783 3' -63 NC_005808.1 + 38077 0.69 0.155968
Target:  5'- cCGCCcagcACGCCACguucacgGGCgCCGCCCGUg- -3'
miRNA:   3'- aGCGGa---UGCGGUG-------CCG-GGUGGGCGua -5'
26783 3' -63 NC_005808.1 + 28216 0.69 0.160631
Target:  5'- aCGCCUACGuuCCGCGGCgCGgaugccCCCGCc- -3'
miRNA:   3'- aGCGGAUGC--GGUGCCGgGU------GGGCGua -5'
26783 3' -63 NC_005808.1 + 28870 0.69 0.171244
Target:  5'- cCGaCCUAUGCCuCGGCCUACCUcaacaaguauuccggGCAg -3'
miRNA:   3'- aGC-GGAUGCGGuGCCGGGUGGG---------------CGUa -5'
26783 3' -63 NC_005808.1 + 14509 0.69 0.173073
Target:  5'- cCGCgacggaauacgACGCCGCGGCCaccuGCCCGCu- -3'
miRNA:   3'- aGCGga---------UGCGGUGCCGGg---UGGGCGua -5'
26783 3' -63 NC_005808.1 + 24200 0.68 0.183444
Target:  5'- uUCGCCgacguggcCGCCAcCGGCgCCAUCgGCAa -3'
miRNA:   3'- -AGCGGau------GCGGU-GCCG-GGUGGgCGUa -5'
26783 3' -63 NC_005808.1 + 40590 0.67 0.209074
Target:  5'- uUCGCCagcgaGCGCCugGGCcucaagaucagCCACUgGCAg -3'
miRNA:   3'- -AGCGGa----UGCGGugCCG-----------GGUGGgCGUa -5'
26783 3' -63 NC_005808.1 + 5351 0.67 0.214557
Target:  5'- aUCGCgCUGCGUgGCcGCCUGCaCCGCGc -3'
miRNA:   3'- -AGCG-GAUGCGgUGcCGGGUG-GGCGUa -5'
26783 3' -63 NC_005808.1 + 40144 0.67 0.22998
Target:  5'- aCGCCUugugcaacaucgugGCGCCGaucuucgaGGCCgGCCUGCu- -3'
miRNA:   3'- aGCGGA--------------UGCGGUg-------CCGGgUGGGCGua -5'
26783 3' -63 NC_005808.1 + 24926 0.79 0.029861
Target:  5'- uUCGCCUACGCC-CaGCCCGCCgaCGCAUc -3'
miRNA:   3'- -AGCGGAUGCGGuGcCGGGUGG--GCGUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.