Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26783 | 3' | -63 | NC_005808.1 | + | 20004 | 0.67 | 0.225894 |
Target: 5'- cUCGCCaacuugcuCGgCAUGGCgCGCCUGCAUc -3' miRNA: 3'- -AGCGGau------GCgGUGCCGgGUGGGCGUA- -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 41751 | 0.67 | 0.23175 |
Target: 5'- -aGCCaUACagGCCACGGUCgGCUCGCu- -3' miRNA: 3'- agCGG-AUG--CGGUGCCGGgUGGGCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 10009 | 0.66 | 0.283295 |
Target: 5'- gUGCCgcGCGCC-CGGCCCccGCCCugGUAg -3' miRNA: 3'- aGCGGa-UGCGGuGCCGGG--UGGG--CGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 12903 | 0.66 | 0.283295 |
Target: 5'- gUCGCCUuuggcgauGCGCU-CGGCCgCGCCCa--- -3' miRNA: 3'- -AGCGGA--------UGCGGuGCCGG-GUGGGcgua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 38561 | 0.66 | 0.276385 |
Target: 5'- cUGCCgcuCGCCGCGGCCgGCUuugaagccuauCGCu- -3' miRNA: 3'- aGCGGau-GCGGUGCCGGgUGG-----------GCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 14420 | 0.66 | 0.276385 |
Target: 5'- gUCGCCaggcGCGCCuGCGGCaCCguguugggcgaaACCUGCGg -3' miRNA: 3'- -AGCGGa---UGCGG-UGCCG-GG------------UGGGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 14582 | 0.66 | 0.276385 |
Target: 5'- -gGCUgAUGCCgGCGGCCgAUCCGCu- -3' miRNA: 3'- agCGGaUGCGG-UGCCGGgUGGGCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 14832 | 0.66 | 0.276385 |
Target: 5'- uUCGCCcaggucgAUGCCguugGCGGCCaGCgCCGCAc -3' miRNA: 3'- -AGCGGa------UGCGG----UGCCGGgUG-GGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 11840 | 0.66 | 0.276385 |
Target: 5'- -gGCC-GCGCCGCGGUUgGCCUGgGc -3' miRNA: 3'- agCGGaUGCGGUGCCGGgUGGGCgUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 33998 | 0.66 | 0.26961 |
Target: 5'- aCGCCUACGCCAUc-CCCACggUCGCc- -3' miRNA: 3'- aGCGGAUGCGGUGccGGGUG--GGCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 23759 | 0.66 | 0.256464 |
Target: 5'- aUGCCgGCGCCACcgGGCCgAUgcgCCGCGg -3' miRNA: 3'- aGCGGaUGCGGUG--CCGGgUG---GGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 32367 | 0.66 | 0.25009 |
Target: 5'- gUCGCCgccgAgGCCcCGGCC-GCCCaGCAg -3' miRNA: 3'- -AGCGGa---UgCGGuGCCGGgUGGG-CGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 16269 | 0.67 | 0.237734 |
Target: 5'- -gGCCU-CGCgCGCGGCC-ACCCGgAa -3' miRNA: 3'- agCGGAuGCG-GUGCCGGgUGGGCgUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 681 | 0.67 | 0.237734 |
Target: 5'- cCGCCUACGgCGgcgcCGGCCgGgCCGCc- -3' miRNA: 3'- aGCGGAUGCgGU----GCCGGgUgGGCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 34081 | 1.05 | 0.00023 |
Target: 5'- aUCGCCUACGCCACGGCCCACCCGCAUc -3' miRNA: 3'- -AGCGGAUGCGGUGCCGGGUGGGCGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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