miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26783 3' -63 NC_005808.1 + 30089 0.76 0.043361
Target:  5'- gCGCCcggGCGCCACGGCCCuuguCCCagGCGa -3'
miRNA:   3'- aGCGGa--UGCGGUGCCGGGu---GGG--CGUa -5'
26783 3' -63 NC_005808.1 + 11840 0.66 0.276385
Target:  5'- -gGCC-GCGCCGCGGUUgGCCUGgGc -3'
miRNA:   3'- agCGGaUGCGGUGCCGGgUGGGCgUa -5'
26783 3' -63 NC_005808.1 + 33998 0.66 0.26961
Target:  5'- aCGCCUACGCCAUc-CCCACggUCGCc- -3'
miRNA:   3'- aGCGGAUGCGGUGccGGGUG--GGCGua -5'
26783 3' -63 NC_005808.1 + 23759 0.66 0.256464
Target:  5'- aUGCCgGCGCCACcgGGCCgAUgcgCCGCGg -3'
miRNA:   3'- aGCGGaUGCGGUG--CCGGgUG---GGCGUa -5'
26783 3' -63 NC_005808.1 + 32367 0.66 0.25009
Target:  5'- gUCGCCgccgAgGCCcCGGCC-GCCCaGCAg -3'
miRNA:   3'- -AGCGGa---UgCGGuGCCGGgUGGG-CGUa -5'
26783 3' -63 NC_005808.1 + 16269 0.67 0.237734
Target:  5'- -gGCCU-CGCgCGCGGCC-ACCCGgAa -3'
miRNA:   3'- agCGGAuGCG-GUGCCGGgUGGGCgUa -5'
26783 3' -63 NC_005808.1 + 681 0.67 0.237734
Target:  5'- cCGCCUACGgCGgcgcCGGCCgGgCCGCc- -3'
miRNA:   3'- aGCGGAUGCgGU----GCCGGgUgGGCGua -5'
26783 3' -63 NC_005808.1 + 41751 0.67 0.23175
Target:  5'- -aGCCaUACagGCCACGGUCgGCUCGCu- -3'
miRNA:   3'- agCGG-AUG--CGGUGCCGGgUGGGCGua -5'
26783 3' -63 NC_005808.1 + 20004 0.67 0.225894
Target:  5'- cUCGCCaacuugcuCGgCAUGGCgCGCCUGCAUc -3'
miRNA:   3'- -AGCGGau------GCgGUGCCGgGUGGGCGUA- -5'
26783 3' -63 NC_005808.1 + 40732 0.67 0.225894
Target:  5'- gCGCCg--GCCACGGgCUgaACCUGCAa -3'
miRNA:   3'- aGCGGaugCGGUGCCgGG--UGGGCGUa -5'
26783 3' -63 NC_005808.1 + 20188 0.67 0.208532
Target:  5'- uUCGCCUugucguCGCCcuCGGUCUuggcagcGCCCGCGg -3'
miRNA:   3'- -AGCGGAu-----GCGGu-GCCGGG-------UGGGCGUa -5'
26783 3' -63 NC_005808.1 + 11515 0.68 0.19847
Target:  5'- gCGCCUGCGCUggcgugaGGCCCugCgaGCGg -3'
miRNA:   3'- aGCGGAUGCGGug-----CCGGGugGg-CGUa -5'
26783 3' -63 NC_005808.1 + 35978 0.68 0.188338
Target:  5'- gCGCgCaGCGCCACGcGCCCGCUgGuCAUc -3'
miRNA:   3'- aGCG-GaUGCGGUGC-CGGGUGGgC-GUA- -5'
26783 3' -63 NC_005808.1 + 23878 0.68 0.178663
Target:  5'- cUCGCCccggaaUACGCCAaggaagUGcGCCaCGCCCGCGg -3'
miRNA:   3'- -AGCGG------AUGCGGU------GC-CGG-GUGGGCGUa -5'
26783 3' -63 NC_005808.1 + 37463 0.7 0.12732
Target:  5'- cCGCCUGCGCgGCacguugcaguucaacGGCgCCAgCCGCAc -3'
miRNA:   3'- aGCGGAUGCGgUG---------------CCG-GGUgGGCGUa -5'
26783 3' -63 NC_005808.1 + 7065 0.71 0.118579
Target:  5'- -gGCCagguacuucaugACGCCGCGGCCUACCCacgGCGc -3'
miRNA:   3'- agCGGa-----------UGCGGUGCCGGGUGGG---CGUa -5'
26783 3' -63 NC_005808.1 + 31590 0.71 0.106806
Target:  5'- cUCGCCUGgGCCugcuucUGGCCCuACCUGCu- -3'
miRNA:   3'- -AGCGGAUgCGGu-----GCCGGG-UGGGCGua -5'
26783 3' -63 NC_005808.1 + 2351 0.72 0.090178
Target:  5'- gCGCgUGCGCCGCaauucGGCCUgcacguggcagacGCCCGCGUg -3'
miRNA:   3'- aGCGgAUGCGGUG-----CCGGG-------------UGGGCGUA- -5'
26783 3' -63 NC_005808.1 + 30129 0.73 0.085521
Target:  5'- gCGCCagaacACGCCGcCGGCCUGCaCCGCGUc -3'
miRNA:   3'- aGCGGa----UGCGGU-GCCGGGUG-GGCGUA- -5'
26783 3' -63 NC_005808.1 + 34081 1.05 0.00023
Target:  5'- aUCGCCUACGCCACGGCCCACCCGCAUc -3'
miRNA:   3'- -AGCGGAUGCGGUGCCGGGUGGGCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.