miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26783 3' -63 NC_005808.1 + 20188 0.67 0.208532
Target:  5'- uUCGCCUugucguCGCCcuCGGUCUuggcagcGCCCGCGg -3'
miRNA:   3'- -AGCGGAu-----GCGGu-GCCGGG-------UGGGCGUa -5'
26783 3' -63 NC_005808.1 + 40590 0.67 0.209074
Target:  5'- uUCGCCagcgaGCGCCugGGCcucaagaucagCCACUgGCAg -3'
miRNA:   3'- -AGCGGa----UGCGGugCCG-----------GGUGGgCGUa -5'
26783 3' -63 NC_005808.1 + 5351 0.67 0.214557
Target:  5'- aUCGCgCUGCGUgGCcGCCUGCaCCGCGc -3'
miRNA:   3'- -AGCG-GAUGCGgUGcCGGGUG-GGCGUa -5'
26783 3' -63 NC_005808.1 + 40732 0.67 0.225894
Target:  5'- gCGCCg--GCCACGGgCUgaACCUGCAa -3'
miRNA:   3'- aGCGGaugCGGUGCCgGG--UGGGCGUa -5'
26783 3' -63 NC_005808.1 + 20004 0.67 0.225894
Target:  5'- cUCGCCaacuugcuCGgCAUGGCgCGCCUGCAUc -3'
miRNA:   3'- -AGCGGau------GCgGUGCCGgGUGGGCGUA- -5'
26783 3' -63 NC_005808.1 + 40144 0.67 0.22998
Target:  5'- aCGCCUugugcaacaucgugGCGCCGaucuucgaGGCCgGCCUGCu- -3'
miRNA:   3'- aGCGGA--------------UGCGGUg-------CCGGgUGGGCGua -5'
26783 3' -63 NC_005808.1 + 41751 0.67 0.23175
Target:  5'- -aGCCaUACagGCCACGGUCgGCUCGCu- -3'
miRNA:   3'- agCGG-AUG--CGGUGCCGGgUGGGCGua -5'
26783 3' -63 NC_005808.1 + 39533 0.67 0.23713
Target:  5'- aUCGCCgaagugggGCGCauucuCGGCUCcuggauuGCCCGCGUg -3'
miRNA:   3'- -AGCGGa-------UGCGgu---GCCGGG-------UGGGCGUA- -5'
26783 3' -63 NC_005808.1 + 16269 0.67 0.237734
Target:  5'- -gGCCU-CGCgCGCGGCC-ACCCGgAa -3'
miRNA:   3'- agCGGAuGCG-GUGCCGGgUGGGCgUa -5'
26783 3' -63 NC_005808.1 + 681 0.67 0.237734
Target:  5'- cCGCCUACGgCGgcgcCGGCCgGgCCGCc- -3'
miRNA:   3'- aGCGGAUGCgGU----GCCGGgUgGGCGua -5'
26783 3' -63 NC_005808.1 + 27006 0.66 0.243847
Target:  5'- -gGCCgAUGgCGCGGUgCAUCCGCAg -3'
miRNA:   3'- agCGGaUGCgGUGCCGgGUGGGCGUa -5'
26783 3' -63 NC_005808.1 + 13020 0.66 0.243847
Target:  5'- gCGCCUGgG-CGCGGCCgACCUGaCGc -3'
miRNA:   3'- aGCGGAUgCgGUGCCGGgUGGGC-GUa -5'
26783 3' -63 NC_005808.1 + 21859 0.66 0.25009
Target:  5'- gCGCCUcuacgGCGCCAgcagcauguCGGCCUgaugggguGCCCGUg- -3'
miRNA:   3'- aGCGGA-----UGCGGU---------GCCGGG--------UGGGCGua -5'
26783 3' -63 NC_005808.1 + 32367 0.66 0.25009
Target:  5'- gUCGCCgccgAgGCCcCGGCC-GCCCaGCAg -3'
miRNA:   3'- -AGCGGa---UgCGGuGCCGGgUGGG-CGUa -5'
26783 3' -63 NC_005808.1 + 15003 0.66 0.256464
Target:  5'- aCGaCC-ACGCCAucUGGCgCCGCCUGCu- -3'
miRNA:   3'- aGC-GGaUGCGGU--GCCG-GGUGGGCGua -5'
26783 3' -63 NC_005808.1 + 23759 0.66 0.256464
Target:  5'- aUGCCgGCGCCACcgGGCCgAUgcgCCGCGg -3'
miRNA:   3'- aGCGGaUGCGGUG--CCGGgUG---GGCGUa -5'
26783 3' -63 NC_005808.1 + 22264 0.66 0.256464
Target:  5'- -aGCCgcaACGaCCACugaaGGCCaGCCCGCAUc -3'
miRNA:   3'- agCGGa--UGC-GGUG----CCGGgUGGGCGUA- -5'
26783 3' -63 NC_005808.1 + 24509 0.66 0.262314
Target:  5'- gCGuCCUgguucGCGCCggcuucgGCGGCCCAgcacgcacCCCGCGc -3'
miRNA:   3'- aGC-GGA-----UGCGG-------UGCCGGGU--------GGGCGUa -5'
26783 3' -63 NC_005808.1 + 33998 0.66 0.26961
Target:  5'- aCGCCUACGCCAUc-CCCACggUCGCc- -3'
miRNA:   3'- aGCGGAUGCGGUGccGGGUG--GGCGua -5'
26783 3' -63 NC_005808.1 + 33768 0.66 0.26961
Target:  5'- -gGCCcGCGUUGCGGCUgGCCCGa-- -3'
miRNA:   3'- agCGGaUGCGGUGCCGGgUGGGCgua -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.