miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26785 5' -53.5 NC_005808.1 + 33959 0.66 0.745221
Target:  5'- gAUGAaggCCGGCGACcUCGCCaccgcagcGGcCGAGa -3'
miRNA:   3'- -UACUaa-GGUCGCUGaAGCGG--------CU-GCUC- -5'
26785 5' -53.5 NC_005808.1 + 32535 0.66 0.745221
Target:  5'- gGUGAUgCCGGCcagGAUgcugcCGCCGGCGAu -3'
miRNA:   3'- -UACUAaGGUCG---CUGaa---GCGGCUGCUc -5'
26785 5' -53.5 NC_005808.1 + 4818 0.66 0.734368
Target:  5'- -gGAUUgcuggCCGGCGACaggUCGCCGuaguCGAu -3'
miRNA:   3'- uaCUAA-----GGUCGCUGa--AGCGGCu---GCUc -5'
26785 5' -53.5 NC_005808.1 + 18392 0.66 0.734368
Target:  5'- -cGAUggcgCCGGUGGCggccaCGUCGGCGAa -3'
miRNA:   3'- uaCUAa---GGUCGCUGaa---GCGGCUGCUc -5'
26785 5' -53.5 NC_005808.1 + 28666 0.66 0.734368
Target:  5'- -cGGUgCCGGCGGCcUCGCCaGCGcGg -3'
miRNA:   3'- uaCUAaGGUCGCUGaAGCGGcUGCuC- -5'
26785 5' -53.5 NC_005808.1 + 14545 0.66 0.734367
Target:  5'- --uGUUCgAGCaGACcgUCGCCGACGuGu -3'
miRNA:   3'- uacUAAGgUCG-CUGa-AGCGGCUGCuC- -5'
26785 5' -53.5 NC_005808.1 + 12327 0.66 0.712343
Target:  5'- ---uUUCCGGCGAC-UCGCgCGACcAGc -3'
miRNA:   3'- uacuAAGGUCGCUGaAGCG-GCUGcUC- -5'
26785 5' -53.5 NC_005808.1 + 712 0.66 0.701198
Target:  5'- -aGAUaCCgcccaggauaggGGCGGCUUUGCCGACa-- -3'
miRNA:   3'- uaCUAaGG------------UCGCUGAAGCGGCUGcuc -5'
26785 5' -53.5 NC_005808.1 + 10037 0.67 0.68998
Target:  5'- cUGAUacgUCgGaGCGGCaUCGCCGGCGGc -3'
miRNA:   3'- uACUA---AGgU-CGCUGaAGCGGCUGCUc -5'
26785 5' -53.5 NC_005808.1 + 5461 0.67 0.656019
Target:  5'- gAUG-UUCCcgccgGGCGGCgaggugUUGCCGAUGGGg -3'
miRNA:   3'- -UACuAAGG-----UCGCUGa-----AGCGGCUGCUC- -5'
26785 5' -53.5 NC_005808.1 + 29234 0.68 0.633239
Target:  5'- cAUGGccuauUUCCAgaagcaauugcGCGACUUCGgCGGCGAc -3'
miRNA:   3'- -UACU-----AAGGU-----------CGCUGAAGCgGCUGCUc -5'
26785 5' -53.5 NC_005808.1 + 35453 0.68 0.621842
Target:  5'- cUGGUcaUCCAGgccgcagccgaCGACUUCGCgGACGuGa -3'
miRNA:   3'- uACUA--AGGUC-----------GCUGAAGCGgCUGCuC- -5'
26785 5' -53.5 NC_005808.1 + 40568 0.7 0.509999
Target:  5'- cGUG-UUCUAucgccugcGCGACUUCGCCaGCGAGc -3'
miRNA:   3'- -UACuAAGGU--------CGCUGAAGCGGcUGCUC- -5'
26785 5' -53.5 NC_005808.1 + 13259 0.74 0.302881
Target:  5'- cGUGGUUCgAG-GACUUgGCCGGCGAc -3'
miRNA:   3'- -UACUAAGgUCgCUGAAgCGGCUGCUc -5'
26785 5' -53.5 NC_005808.1 + 37724 0.74 0.295165
Target:  5'- cAUGAUUgC-GUGGC-UCGCCGGCGAGg -3'
miRNA:   3'- -UACUAAgGuCGCUGaAGCGGCUGCUC- -5'
26785 5' -53.5 NC_005808.1 + 34353 1.08 0.001243
Target:  5'- gAUGAUUCCAGCGACUUCGCCGACGAGg -3'
miRNA:   3'- -UACUAAGGUCGCUGAAGCGGCUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.