miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26787 3' -59.5 NC_005808.1 + 28056 0.66 0.47028
Target:  5'- uCUCGUCGCUGuuguccggcgccGGCG-ACGugGCUGAu -3'
miRNA:   3'- -GGGCGGCGAC------------CUGCuUGCugCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 13727 0.67 0.404451
Target:  5'- -aCGCCaGCagcgaGGACGuggcGCGGCGCUGGGa -3'
miRNA:   3'- ggGCGG-CGa----CCUGCu---UGCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 14706 0.72 0.194603
Target:  5'- aUCCGCgacgUGCUGGGCGAGC-ACGCCaAGa -3'
miRNA:   3'- -GGGCG----GCGACCUGCUUGcUGCGGcUC- -5'
26787 3' -59.5 NC_005808.1 + 13500 0.66 0.441372
Target:  5'- aCCgCGCCuuUGGGCGAgguaaGCGguuugccguccGCGCCGAa -3'
miRNA:   3'- -GG-GCGGcgACCUGCU-----UGC-----------UGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 41509 0.66 0.490077
Target:  5'- aCCGCCGCcaacAUGAaguACGcGCGCCGGGu -3'
miRNA:   3'- gGGCGGCGacc-UGCU---UGC-UGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 32855 0.74 0.134097
Target:  5'- cCUgGCCGCa-GACGGuCGGCGCCGAGa -3'
miRNA:   3'- -GGgCGGCGacCUGCUuGCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 36434 0.66 0.47028
Target:  5'- aCCgGCCugcGCUGGGaagauGACGGCGgCGAGu -3'
miRNA:   3'- -GGgCGG---CGACCUgc---UUGCUGCgGCUC- -5'
26787 3' -59.5 NC_005808.1 + 24675 0.66 0.460534
Target:  5'- gCCCGCCGC-GGGCc-ACGuccACGCCcAGg -3'
miRNA:   3'- -GGGCGGCGaCCUGcuUGC---UGCGGcUC- -5'
26787 3' -59.5 NC_005808.1 + 1302 0.71 0.233049
Target:  5'- aCCGCCGCgcccaGGGCGA-CGGCcaccagGCCGAc -3'
miRNA:   3'- gGGCGGCGa----CCUGCUuGCUG------CGGCUc -5'
26787 3' -59.5 NC_005808.1 + 32346 0.7 0.264278
Target:  5'- aCCGCCGCccaGGucgcuGCGGuCGcCGCCGAGg -3'
miRNA:   3'- gGGCGGCGa--CC-----UGCUuGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 11148 0.66 0.450897
Target:  5'- gCCUGCUGCUGGGCcgccuGCGcacguugcguGCGCUGGu -3'
miRNA:   3'- -GGGCGGCGACCUGcu---UGC----------UGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 11928 0.66 0.448983
Target:  5'- aCCGCCgugcccagGCUGGACaguaccgacuCGAUGCCGGu -3'
miRNA:   3'- gGGCGG--------CGACCUGcuu-------GCUGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 11233 0.67 0.429161
Target:  5'- uCCCGCCcacgcccacuaGCgUGG-CGAugaggguuugcgcuGCGGCGCUGGGa -3'
miRNA:   3'- -GGGCGG-----------CG-ACCuGCU--------------UGCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 40291 0.69 0.31358
Target:  5'- gCCUGUCGCUGGACGcccGCGACuauuUCGAc -3'
miRNA:   3'- -GGGCGGCGACCUGCu--UGCUGc---GGCUc -5'
26787 3' -59.5 NC_005808.1 + 11841 0.69 0.32889
Target:  5'- gCCgCGCCGCgguuggccUGGGCGAACcccGCGCCa-- -3'
miRNA:   3'- -GG-GCGGCG--------ACCUGCUUGc--UGCGGcuc -5'
26787 3' -59.5 NC_005808.1 + 38897 0.68 0.344744
Target:  5'- -gCGCCGCaugGGGCaGcGCGuCGCCGGGu -3'
miRNA:   3'- ggGCGGCGa--CCUG-CuUGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 15916 0.68 0.364485
Target:  5'- gCCGCUGCUGcuGAUGAaccacacgauaggcuGCGGCGCCu-- -3'
miRNA:   3'- gGGCGGCGAC--CUGCU---------------UGCUGCGGcuc -5'
26787 3' -59.5 NC_005808.1 + 30371 0.68 0.377213
Target:  5'- aCCCGCCGCUgcuguagGGugGGucggugauaACGGCGUCc-- -3'
miRNA:   3'- -GGGCGGCGA-------CCugCU---------UGCUGCGGcuc -5'
26787 3' -59.5 NC_005808.1 + 24442 0.66 0.441372
Target:  5'- gCCGCgCGCggccucGGCGAcauUGACGCCGAc -3'
miRNA:   3'- gGGCG-GCGac----CUGCUu--GCUGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 34666 0.66 0.441372
Target:  5'- gCCGUgGCgugaaGGugGACGCCGAGc -3'
miRNA:   3'- gGGCGgCGaccugCUugCUGCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.