Results 61 - 72 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 11148 | 0.66 | 0.450897 |
Target: 5'- gCCUGCUGCUGGGCcgccuGCGcacguugcguGCGCUGGu -3' miRNA: 3'- -GGGCGGCGACCUGcu---UGC----------UGCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 36434 | 0.66 | 0.47028 |
Target: 5'- aCCgGCCugcGCUGGGaagauGACGGCGgCGAGu -3' miRNA: 3'- -GGgCGG---CGACCUgc---UUGCUGCgGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 11928 | 0.66 | 0.448983 |
Target: 5'- aCCGCCgugcccagGCUGGACaguaccgacuCGAUGCCGGu -3' miRNA: 3'- gGGCGG--------CGACCUGcuu-------GCUGCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 24442 | 0.66 | 0.441372 |
Target: 5'- gCCGCgCGCggccucGGCGAcauUGACGCCGAc -3' miRNA: 3'- gGGCG-GCGac----CUGCUu--GCUGCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 34666 | 0.66 | 0.441372 |
Target: 5'- gCCGUgGCgugaaGGugGACGCCGAGc -3' miRNA: 3'- gGGCGgCGaccugCUugCUGCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 13500 | 0.66 | 0.441372 |
Target: 5'- aCCgCGCCuuUGGGCGAgguaaGCGguuugccguccGCGCCGAa -3' miRNA: 3'- -GG-GCGGcgACCUGCU-----UGC-----------UGCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 11233 | 0.67 | 0.429161 |
Target: 5'- uCCCGCCcacgcccacuaGCgUGG-CGAugaggguuugcgcuGCGGCGCUGGGa -3' miRNA: 3'- -GGGCGG-----------CG-ACCuGCU--------------UGCUGCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 4035 | 0.67 | 0.413498 |
Target: 5'- -aUGCCGCgcgGGuCGAGCG-CaGCCGGGc -3' miRNA: 3'- ggGCGGCGa--CCuGCUUGCuG-CGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 28281 | 0.67 | 0.413498 |
Target: 5'- aCCGCgCGCUGGGac-ACGGCGCaGAa -3' miRNA: 3'- gGGCG-GCGACCUgcuUGCUGCGgCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 8994 | 0.67 | 0.413498 |
Target: 5'- cCUCGCCGCgcggGGGCGcuuccagcaGGCGGCGCa--- -3' miRNA: 3'- -GGGCGGCGa---CCUGC---------UUGCUGCGgcuc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 35197 | 0.67 | 0.413498 |
Target: 5'- gCCCgGCUucaaGCUGGugGAAgGuCGCCGcGg -3' miRNA: 3'- -GGG-CGG----CGACCugCUUgCuGCGGCuC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 35231 | 1.1 | 0.000284 |
Target: 5'- gCCCGCCGCUGGACGAACGACGCCGAGg -3' miRNA: 3'- -GGGCGGCGACCUGCUUGCUGCGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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