Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26788 | 3' | -59.6 | NC_005808.1 | + | 19085 | 0.69 | 0.285361 |
Target: 5'- -gGUCACGCGAuugcagGCCGGCCUGCgaacccuUCGgGu -3' miRNA: 3'- ggUAGUGCGCU------CGGCUGGGCG-------AGCgC- -5' |
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26788 | 3' | -59.6 | NC_005808.1 | + | 14886 | 0.7 | 0.27229 |
Target: 5'- uCCAUgACcggcgGCGAGCCGcuGCCgGCgCGCGg -3' miRNA: 3'- -GGUAgUG-----CGCUCGGC--UGGgCGaGCGC- -5' |
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26788 | 3' | -59.6 | NC_005808.1 | + | 14363 | 0.7 | 0.27229 |
Target: 5'- ---cCugGCGcAGuCCGACCCGCgCGUGg -3' miRNA: 3'- gguaGugCGC-UC-GGCUGGGCGaGCGC- -5' |
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26788 | 3' | -59.6 | NC_005808.1 | + | 40357 | 0.7 | 0.252636 |
Target: 5'- uUCAUUGCGCGGccacgcGCCG-CCUGCUgCGCGu -3' miRNA: 3'- -GGUAGUGCGCU------CGGCuGGGCGA-GCGC- -5' |
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26788 | 3' | -59.6 | NC_005808.1 | + | 38379 | 0.7 | 0.246349 |
Target: 5'- aCGUUACGCaAGCCgcaagccgcGACgUGCUCGCGg -3' miRNA: 3'- gGUAGUGCGcUCGG---------CUGgGCGAGCGC- -5' |
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26788 | 3' | -59.6 | NC_005808.1 | + | 19065 | 0.71 | 0.234165 |
Target: 5'- gCCAUCGacCGCGugcGCCGccuggaagGCgCGCUCGCGg -3' miRNA: 3'- -GGUAGU--GCGCu--CGGC--------UGgGCGAGCGC- -5' |
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26788 | 3' | -59.6 | NC_005808.1 | + | 17281 | 0.71 | 0.228264 |
Target: 5'- gCCGUcCACGa-AGCCGGCgCCGCgggCGCGc -3' miRNA: 3'- -GGUA-GUGCgcUCGGCUG-GGCGa--GCGC- -5' |
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26788 | 3' | -59.6 | NC_005808.1 | + | 18678 | 0.71 | 0.216283 |
Target: 5'- aCCAUCACGCcuauGCCGGCauggaagCCGCgggCGUGg -3' miRNA: 3'- -GGUAGUGCGcu--CGGCUG-------GGCGa--GCGC- -5' |
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26788 | 3' | -59.6 | NC_005808.1 | + | 23492 | 0.72 | 0.178759 |
Target: 5'- aCCAUCuacccgaaggguuCGCaGGCCGGCCUGCaaUCGCGu -3' miRNA: 3'- -GGUAGu------------GCGcUCGGCUGGGCG--AGCGC- -5' |
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26788 | 3' | -59.6 | NC_005808.1 | + | 30357 | 0.72 | 0.200627 |
Target: 5'- gUCGUCGCGCGAGa--ACCCGC-CGCu -3' miRNA: 3'- -GGUAGUGCGCUCggcUGGGCGaGCGc -5' |
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26788 | 3' | -59.6 | NC_005808.1 | + | 26009 | 0.73 | 0.166854 |
Target: 5'- aCCAUCGCGUG-GUCGGCCuCGUccggCGCGu -3' miRNA: 3'- -GGUAGUGCGCuCGGCUGG-GCGa---GCGC- -5' |
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26788 | 3' | -59.6 | NC_005808.1 | + | 6998 | 0.73 | 0.149924 |
Target: 5'- aCA-CGCGCGAGCgGGUCgGCUCGCGu -3' miRNA: 3'- gGUaGUGCGCUCGgCUGGgCGAGCGC- -5' |
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26788 | 3' | -59.6 | NC_005808.1 | + | 16317 | 0.74 | 0.145943 |
Target: 5'- uCCAUCgcgcgcgauGCGCGAGCCGACCagGC-CgGCGg -3' miRNA: 3'- -GGUAG---------UGCGCUCGGCUGGg-CGaG-CGC- -5' |
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26788 | 3' | -59.6 | NC_005808.1 | + | 41988 | 0.74 | 0.138268 |
Target: 5'- uCCAcgGCGCugcuGGCCGACCCGCagGCGg -3' miRNA: 3'- -GGUagUGCGc---UCGGCUGGGCGagCGC- -5' |
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26788 | 3' | -59.6 | NC_005808.1 | + | 35593 | 1.09 | 0.000324 |
Target: 5'- cCCAUCACGCGAGCCGACCCGCUCGCGc -3' miRNA: 3'- -GGUAGUGCGCUCGGCUGGGCGAGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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