miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26789 3' -53.2 NC_005808.1 + 10003 0.66 0.730912
Target:  5'- cGCGGGCCaGCUUggUCacaGCGUCGg- -3'
miRNA:   3'- cCGUUCGGaCGAAagAGg--CGUAGCaa -5'
26789 3' -53.2 NC_005808.1 + 30413 0.66 0.719754
Target:  5'- cGCGGGCCgGUUUcgUUCuCGCAUCGg- -3'
miRNA:   3'- cCGUUCGGaCGAAa-GAG-GCGUAGCaa -5'
26789 3' -53.2 NC_005808.1 + 26262 0.66 0.7085
Target:  5'- gGGCAcccgccGGCCUGgUcggCUCgCGCAUCGc- -3'
miRNA:   3'- -CCGU------UCGGACgAaa-GAG-GCGUAGCaa -5'
26789 3' -53.2 NC_005808.1 + 1762 0.66 0.685758
Target:  5'- uGGCcGGCCUGCgccuggCGCGUCGg- -3'
miRNA:   3'- -CCGuUCGGACGaaagagGCGUAGCaa -5'
26789 3' -53.2 NC_005808.1 + 21187 0.67 0.628128
Target:  5'- uGCGcGGCCUGCUgcuggUCUgCGCGUUGc- -3'
miRNA:   3'- cCGU-UCGGACGAa----AGAgGCGUAGCaa -5'
26789 3' -53.2 NC_005808.1 + 9417 0.68 0.616567
Target:  5'- cGCGGGCUUGCaggUCUUgaauaGCGUCGUUg -3'
miRNA:   3'- cCGUUCGGACGaa-AGAGg----CGUAGCAA- -5'
26789 3' -53.2 NC_005808.1 + 30313 0.69 0.513288
Target:  5'- uGCGAGCC-GCUUUgcguguaCUUCGCGUCGg- -3'
miRNA:   3'- cCGUUCGGaCGAAA-------GAGGCGUAGCaa -5'
26789 3' -53.2 NC_005808.1 + 30709 0.7 0.460588
Target:  5'- uGGCGGGCaugGCUUUCUCCaucggaauGCGUCa-- -3'
miRNA:   3'- -CCGUUCGga-CGAAAGAGG--------CGUAGcaa -5'
26789 3' -53.2 NC_005808.1 + 35765 1.07 0.0013
Target:  5'- gGGCAAGCCUGCUUUCUCCGCAUCGUUc -3'
miRNA:   3'- -CCGUUCGGACGAAAGAGGCGUAGCAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.