miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2679 3' -58.1 NC_001491.2 + 47393 0.66 0.82266
Target:  5'- aACGuuuUGuGC-GGCCACGCGGGUg -3'
miRNA:   3'- gUGCucuACuCGcCCGGUGCGCUCAa -5'
2679 3' -58.1 NC_001491.2 + 28741 0.66 0.82266
Target:  5'- gACGGGAUGAGgGGG-CugGUGGa-- -3'
miRNA:   3'- gUGCUCUACUCgCCCgGugCGCUcaa -5'
2679 3' -58.1 NC_001491.2 + 10971 0.66 0.81408
Target:  5'- aGCGGGggGAGCGguaggggaGGCCGaGCGGGg- -3'
miRNA:   3'- gUGCUCuaCUCGC--------CCGGUgCGCUCaa -5'
2679 3' -58.1 NC_001491.2 + 12545 0.66 0.805338
Target:  5'- -cCGAGcgGGcGCGGGagCGCGCGAGc- -3'
miRNA:   3'- guGCUCuaCU-CGCCCg-GUGCGCUCaa -5'
2679 3' -58.1 NC_001491.2 + 144876 0.66 0.787394
Target:  5'- -gUGAGAUGuuucaCGGGgCGCGCGAGa- -3'
miRNA:   3'- guGCUCUACuc---GCCCgGUGCGCUCaa -5'
2679 3' -58.1 NC_001491.2 + 80705 0.66 0.787394
Target:  5'- aACGAGGaauGCGGGUguUGCGGGUa -3'
miRNA:   3'- gUGCUCUacuCGCCCGguGCGCUCAa -5'
2679 3' -58.1 NC_001491.2 + 2967 0.67 0.759463
Target:  5'- -cUGAGggGAGCGGGCCuucUGCGGc-- -3'
miRNA:   3'- guGCUCuaCUCGCCCGGu--GCGCUcaa -5'
2679 3' -58.1 NC_001491.2 + 118075 0.67 0.749917
Target:  5'- uCACGAGcUGAaacUGGGCgACGCGAGc- -3'
miRNA:   3'- -GUGCUCuACUc--GCCCGgUGCGCUCaa -5'
2679 3' -58.1 NC_001491.2 + 39349 0.67 0.720701
Target:  5'- uGCG-GGUGAGCGGcCCAUGCGGc-- -3'
miRNA:   3'- gUGCuCUACUCGCCcGGUGCGCUcaa -5'
2679 3' -58.1 NC_001491.2 + 36430 0.68 0.680735
Target:  5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3'
miRNA:   3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5'
2679 3' -58.1 NC_001491.2 + 36466 0.68 0.680735
Target:  5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3'
miRNA:   3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5'
2679 3' -58.1 NC_001491.2 + 36502 0.68 0.680735
Target:  5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3'
miRNA:   3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5'
2679 3' -58.1 NC_001491.2 + 36538 0.68 0.680735
Target:  5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3'
miRNA:   3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5'
2679 3' -58.1 NC_001491.2 + 36574 0.68 0.680735
Target:  5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3'
miRNA:   3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5'
2679 3' -58.1 NC_001491.2 + 36610 0.68 0.680735
Target:  5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3'
miRNA:   3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5'
2679 3' -58.1 NC_001491.2 + 36646 0.68 0.680735
Target:  5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3'
miRNA:   3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5'
2679 3' -58.1 NC_001491.2 + 36682 0.68 0.680735
Target:  5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3'
miRNA:   3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5'
2679 3' -58.1 NC_001491.2 + 36718 0.68 0.680735
Target:  5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3'
miRNA:   3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5'
2679 3' -58.1 NC_001491.2 + 36754 0.68 0.680735
Target:  5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3'
miRNA:   3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5'
2679 3' -58.1 NC_001491.2 + 36394 0.68 0.680735
Target:  5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3'
miRNA:   3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.