Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2679 | 3' | -58.1 | NC_001491.2 | + | 63606 | 1.04 | 0.003398 |
Target: 5'- cCACGAGAUGAGCGGGCCACGCGAGUUu -3' miRNA: 3'- -GUGCUCUACUCGCCCGGUGCGCUCAA- -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 37239 | 0.69 | 0.637075 |
Target: 5'- aCGCGGGcUGGGgGGGCCaggcucucucucggGCGCGGGc- -3' miRNA: 3'- -GUGCUCuACUCgCCCGG--------------UGCGCUCaa -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 36682 | 0.68 | 0.680735 |
Target: 5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3' miRNA: 3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 36646 | 0.68 | 0.680735 |
Target: 5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3' miRNA: 3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 36610 | 0.68 | 0.680735 |
Target: 5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3' miRNA: 3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 36574 | 0.68 | 0.680735 |
Target: 5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3' miRNA: 3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 36538 | 0.68 | 0.680735 |
Target: 5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3' miRNA: 3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 36502 | 0.68 | 0.680735 |
Target: 5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3' miRNA: 3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 36466 | 0.68 | 0.680735 |
Target: 5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3' miRNA: 3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 36430 | 0.68 | 0.680735 |
Target: 5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3' miRNA: 3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 36718 | 0.68 | 0.680735 |
Target: 5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3' miRNA: 3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 36754 | 0.68 | 0.680735 |
Target: 5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3' miRNA: 3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 36394 | 0.68 | 0.680735 |
Target: 5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3' miRNA: 3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 36790 | 0.68 | 0.680735 |
Target: 5'- gGCGGguuGAUGGGCGGGUUgauGgGCGGGUUg -3' miRNA: 3'- gUGCU---CUACUCGCCCGG---UgCGCUCAA- -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 39349 | 0.67 | 0.720701 |
Target: 5'- uGCG-GGUGAGCGGcCCAUGCGGc-- -3' miRNA: 3'- gUGCuCUACUCGCCcGGUGCGCUcaa -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 118075 | 0.67 | 0.749917 |
Target: 5'- uCACGAGcUGAaacUGGGCgACGCGAGc- -3' miRNA: 3'- -GUGCUCuACUc--GCCCGgUGCGCUCaa -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 2967 | 0.67 | 0.759463 |
Target: 5'- -cUGAGggGAGCGGGCCuucUGCGGc-- -3' miRNA: 3'- guGCUCuaCUCGCCCGGu--GCGCUcaa -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 144876 | 0.66 | 0.787394 |
Target: 5'- -gUGAGAUGuuucaCGGGgCGCGCGAGa- -3' miRNA: 3'- guGCUCUACuc---GCCCgGUGCGCUCaa -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 80705 | 0.66 | 0.787394 |
Target: 5'- aACGAGGaauGCGGGUguUGCGGGUa -3' miRNA: 3'- gUGCUCUacuCGCCCGguGCGCUCAa -5' |
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2679 | 3' | -58.1 | NC_001491.2 | + | 12545 | 0.66 | 0.805338 |
Target: 5'- -cCGAGcgGGcGCGGGagCGCGCGAGc- -3' miRNA: 3'- guGCUCuaCU-CGCCCg-GUGCGCUCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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