miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2679 5' -56.4 NC_001491.2 + 12483 0.66 0.888975
Target:  5'- -cGGCgggCGGCGGGCGcccgcGGGUCcCCgGGg -3'
miRNA:   3'- gaUCGa--GCCGUCCGU-----UUCGGaGGaCC- -5'
2679 5' -56.4 NC_001491.2 + 3823 0.66 0.888975
Target:  5'- gCUGGCU-GGCcgcGGCAGcGGCggCCUGGg -3'
miRNA:   3'- -GAUCGAgCCGu--CCGUU-UCGgaGGACC- -5'
2679 5' -56.4 NC_001491.2 + 11212 0.66 0.888975
Target:  5'- -gAGCgggggagagCGGUAGGgGAAacGCCgCCUGGg -3'
miRNA:   3'- gaUCGa--------GCCGUCCgUUU--CGGaGGACC- -5'
2679 5' -56.4 NC_001491.2 + 2689 0.66 0.888975
Target:  5'- -gGGCccUCGGCuGGCAugggucccaGGGCCcggggagCCUGGu -3'
miRNA:   3'- gaUCG--AGCCGuCCGU---------UUCGGa------GGACC- -5'
2679 5' -56.4 NC_001491.2 + 116607 0.66 0.882036
Target:  5'- -aGGCcCGGCAGGCuaGAAaCUguagCCUGGg -3'
miRNA:   3'- gaUCGaGCCGUCCG--UUUcGGa---GGACC- -5'
2679 5' -56.4 NC_001491.2 + 149892 0.66 0.874873
Target:  5'- -gGGCgUGGCcucccaguGGGCGuGGCCUCCcagUGGg -3'
miRNA:   3'- gaUCGaGCCG--------UCCGUuUCGGAGG---ACC- -5'
2679 5' -56.4 NC_001491.2 + 149841 0.66 0.874873
Target:  5'- -gGGCgUGGCcucccaguGGGCGuGGCCUCCcagUGGg -3'
miRNA:   3'- gaUCGaGCCG--------UCCGUuUCGGAGG---ACC- -5'
2679 5' -56.4 NC_001491.2 + 149790 0.66 0.874873
Target:  5'- -gGGCgUGGCcucccaguGGGCGuGGCCUCCcagUGGg -3'
miRNA:   3'- gaUCGaGCCG--------UCCGUuUCGGAGG---ACC- -5'
2679 5' -56.4 NC_001491.2 + 149739 0.66 0.874873
Target:  5'- -gGGCgUGGCcucccaguGGGCGuGGCCUCCcagUGGg -3'
miRNA:   3'- gaUCGaGCCG--------UCCGUuUCGGAGG---ACC- -5'
2679 5' -56.4 NC_001491.2 + 48481 0.66 0.867491
Target:  5'- cCUGGC-CGGUAaacuguauguGGCcaacAGCCUCCUGc -3'
miRNA:   3'- -GAUCGaGCCGU----------CCGuu--UCGGAGGACc -5'
2679 5' -56.4 NC_001491.2 + 16551 0.67 0.85209
Target:  5'- aUGGCUggaaccaaUGGCAuaaCAGGGCCUCCUGa -3'
miRNA:   3'- gAUCGA--------GCCGUcc-GUUUCGGAGGACc -5'
2679 5' -56.4 NC_001491.2 + 63318 0.67 0.81019
Target:  5'- -gAGCUUgGGCGGGgGAggcgcaaaccuAGCCagCCUGGg -3'
miRNA:   3'- gaUCGAG-CCGUCCgUU-----------UCGGa-GGACC- -5'
2679 5' -56.4 NC_001491.2 + 35156 0.68 0.792231
Target:  5'- -gGGCUCcGcCAGGCGcAAGC-UCCUGGu -3'
miRNA:   3'- gaUCGAGcC-GUCCGU-UUCGgAGGACC- -5'
2679 5' -56.4 NC_001491.2 + 34371 0.68 0.792231
Target:  5'- -gGGCaagagCGGCAagcGGCGcuccGAGCC-CCUGGa -3'
miRNA:   3'- gaUCGa----GCCGU---CCGU----UUCGGaGGACC- -5'
2679 5' -56.4 NC_001491.2 + 33092 0.69 0.715294
Target:  5'- -aAGCUCaGCGGGCAAGaCCagaaCCUGGc -3'
miRNA:   3'- gaUCGAGcCGUCCGUUUcGGa---GGACC- -5'
2679 5' -56.4 NC_001491.2 + 2899 0.7 0.648146
Target:  5'- aUGGCaCGGuCguccgaggaggagccGGGCAucGCCUCCUGGc -3'
miRNA:   3'- gAUCGaGCC-G---------------UCCGUuuCGGAGGACC- -5'
2679 5' -56.4 NC_001491.2 + 1357 0.73 0.5123
Target:  5'- -gGGCUcCGGCAGGCAcAGC-UCCgUGGc -3'
miRNA:   3'- gaUCGA-GCCGUCCGUuUCGgAGG-ACC- -5'
2679 5' -56.4 NC_001491.2 + 1443 0.76 0.344302
Target:  5'- -gGGCUCGGCGGcGgGGAGCCUCggugaUGGg -3'
miRNA:   3'- gaUCGAGCCGUC-CgUUUCGGAGg----ACC- -5'
2679 5' -56.4 NC_001491.2 + 63643 1.1 0.002075
Target:  5'- gCUAGCUCGGCAGGCAAAGCCUCCUGGu -3'
miRNA:   3'- -GAUCGAGCCGUCCGUUUCGGAGGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.