miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26790 5' -55.5 NC_005808.1 + 5724 0.66 0.646544
Target:  5'- -uGGGg--GCCUGCACGGUucggcuaaguuugucGGCGAg- -3'
miRNA:   3'- guUCCacaCGGACGUGCUA---------------CCGCUgg -5'
26790 5' -55.5 NC_005808.1 + 4871 0.66 0.642059
Target:  5'- -cAGGUcGuUGCCcaGCGCGGcgacGGCGGCCu -3'
miRNA:   3'- guUCCA-C-ACGGa-CGUGCUa---CCGCUGG- -5'
26790 5' -55.5 NC_005808.1 + 9124 0.66 0.640936
Target:  5'- --cGGUG-GCCgUGcCGCGAUagccagcGGUGGCCg -3'
miRNA:   3'- guuCCACaCGG-AC-GUGCUA-------CCGCUGG- -5'
26790 5' -55.5 NC_005808.1 + 9172 0.66 0.640936
Target:  5'- --cGGUG-GCCgUGcCGCGAUagccagcGGUGGCCg -3'
miRNA:   3'- guuCCACaCGG-AC-GUGCUA-------CCGCUGG- -5'
26790 5' -55.5 NC_005808.1 + 9316 0.66 0.640936
Target:  5'- --cGGUG-GCCgUGcCGCGAUagccagcGGUGGCCg -3'
miRNA:   3'- guuCCACaCGG-AC-GUGCUA-------CCGCUGG- -5'
26790 5' -55.5 NC_005808.1 + 9364 0.66 0.640936
Target:  5'- --cGGUG-GCCgUGcCGCGAUagccagcGGUGGCCg -3'
miRNA:   3'- guuCCACaCGG-AC-GUGCUA-------CCGCUGG- -5'
26790 5' -55.5 NC_005808.1 + 9028 0.66 0.640936
Target:  5'- --cGGUG-GCCgUGcCGCGAUagccagcGGUGGCCg -3'
miRNA:   3'- guuCCACaCGG-AC-GUGCUA-------CCGCUGG- -5'
26790 5' -55.5 NC_005808.1 + 9268 0.66 0.640936
Target:  5'- --cGGUG-GCCgUGcCGCGAUagccagcGGUGGCCg -3'
miRNA:   3'- guuCCACaCGG-AC-GUGCUA-------CCGCUGG- -5'
26790 5' -55.5 NC_005808.1 + 9220 0.66 0.640936
Target:  5'- --cGGUG-GCCgUGcCGCGAUagccagcGGUGGCCg -3'
miRNA:   3'- guuCCACaCGG-AC-GUGCUA-------CCGCUGG- -5'
26790 5' -55.5 NC_005808.1 + 9076 0.66 0.640936
Target:  5'- --cGGUG-GCCgUGcCGCGAUagccagcGGUGGCCg -3'
miRNA:   3'- guuCCACaCGG-AC-GUGCUA-------CCGCUGG- -5'
26790 5' -55.5 NC_005808.1 + 29917 0.66 0.629718
Target:  5'- uCAAGGcGgGCCUcgacacgcgccgcGCAUGAUgGGCGACg -3'
miRNA:   3'- -GUUCCaCaCGGA-------------CGUGCUA-CCGCUGg -5'
26790 5' -55.5 NC_005808.1 + 13471 0.66 0.629718
Target:  5'- --cGGUGUcgggcauGaCCUGgGCGAUGcCGACCg -3'
miRNA:   3'- guuCCACA-------C-GGACgUGCUACcGCUGG- -5'
26790 5' -55.5 NC_005808.1 + 5976 0.66 0.619623
Target:  5'- uCAAGGUGgauucacaccGUCUGCGuCGcucaaaAUGGCGACg -3'
miRNA:   3'- -GUUCCACa---------CGGACGU-GC------UACCGCUGg -5'
26790 5' -55.5 NC_005808.1 + 26062 0.66 0.619622
Target:  5'- gCAAGGcG-GCCUGUACGGcuauaucGGCcaGACCa -3'
miRNA:   3'- -GUUCCaCaCGGACGUGCUa------CCG--CUGG- -5'
26790 5' -55.5 NC_005808.1 + 40580 0.67 0.563899
Target:  5'- --cGGUaUGCCgGUGCuGGUGGCGuACCa -3'
miRNA:   3'- guuCCAcACGGaCGUG-CUACCGC-UGG- -5'
26790 5' -55.5 NC_005808.1 + 28162 0.67 0.551794
Target:  5'- -cAGGUuucgcccaacacgGUGCCgcagGCGCGccUGGCGACg -3'
miRNA:   3'- guUCCA-------------CACGGa---CGUGCu-ACCGCUGg -5'
26790 5' -55.5 NC_005808.1 + 33926 0.68 0.519215
Target:  5'- cCGAGGUcGcgcggcacgcaaUGCCgaccGCGCGAUgaaggccGGCGACCu -3'
miRNA:   3'- -GUUCCA-C------------ACGGa---CGUGCUA-------CCGCUGG- -5'
26790 5' -55.5 NC_005808.1 + 34375 0.68 0.509587
Target:  5'- aCGAGGgcacgGCCgcGCACGAacUGGCcGCCa -3'
miRNA:   3'- -GUUCCaca--CGGa-CGUGCU--ACCGcUGG- -5'
26790 5' -55.5 NC_005808.1 + 34676 0.68 0.498978
Target:  5'- gAAGGUGgacGCCgagcGCaACGAgcagcUGGCGAUCu -3'
miRNA:   3'- gUUCCACa--CGGa---CG-UGCU-----ACCGCUGG- -5'
26790 5' -55.5 NC_005808.1 + 17464 0.68 0.498978
Target:  5'- -cAGGUGccacgccaggGCCUGCACGAacaGCGGCg -3'
miRNA:   3'- guUCCACa---------CGGACGUGCUac-CGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.