miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26791 3' -53.7 NC_005808.1 + 40376 0.67 0.705108
Target:  5'- cCGCCUGCUGcG-CGUggugcuaccCGACGAGGGCg -3'
miRNA:   3'- cGCGGGCGAC-CaGUA---------GCUGUUUCUGg -5'
26791 3' -53.7 NC_005808.1 + 25312 0.67 0.705108
Target:  5'- cGCGCCCGC-GG-CGcCGGCuucguGGACg -3'
miRNA:   3'- -CGCGGGCGaCCaGUaGCUGuu---UCUGg -5'
26791 3' -53.7 NC_005808.1 + 28555 0.67 0.705108
Target:  5'- uGCGgCCGCcGGcCAUCGcggcgcgcACGucGGCCa -3'
miRNA:   3'- -CGCgGGCGaCCaGUAGC--------UGUuuCUGG- -5'
26791 3' -53.7 NC_005808.1 + 39357 0.67 0.701805
Target:  5'- aGUGCCUGCUcGGgcaggucgaauuauUCAUCGugGcGGGCa -3'
miRNA:   3'- -CGCGGGCGA-CC--------------AGUAGCugUuUCUGg -5'
26791 3' -53.7 NC_005808.1 + 20454 0.67 0.694075
Target:  5'- gGCcCUCGUUccGGUUcccuUCGGCGAAGGCCa -3'
miRNA:   3'- -CGcGGGCGA--CCAGu---AGCUGUUUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 19034 0.67 0.682979
Target:  5'- cCGCCCGCaccugccGGcgaUGUCGGCcGAGGCCa -3'
miRNA:   3'- cGCGGGCGa------CCa--GUAGCUGuUUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 860 0.67 0.682979
Target:  5'- -gGCCUGUaUGGcUUucguuucccuAUCGACGAGGGCCg -3'
miRNA:   3'- cgCGGGCG-ACC-AG----------UAGCUGUUUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 21117 0.67 0.682979
Target:  5'- uUGCuuGCUGG-UAUCGACGcuGcCCa -3'
miRNA:   3'- cGCGggCGACCaGUAGCUGUuuCuGG- -5'
26791 3' -53.7 NC_005808.1 + 15385 0.67 0.671833
Target:  5'- cGCGUCCGCgugcGGgc--CGGCGAAGAUg -3'
miRNA:   3'- -CGCGGGCGa---CCaguaGCUGUUUCUGg -5'
26791 3' -53.7 NC_005808.1 + 32519 0.67 0.671833
Target:  5'- cGCGCCCgugcagGCUGGUgAUgcCGGCcAGGAUg -3'
miRNA:   3'- -CGCGGG------CGACCAgUA--GCUGuUUCUGg -5'
26791 3' -53.7 NC_005808.1 + 27661 0.67 0.671833
Target:  5'- uCGCCgaGUUGGgcgcgcaGUCGGCAcuuGAGGCCg -3'
miRNA:   3'- cGCGGg-CGACCag-----UAGCUGU---UUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 13746 0.67 0.671833
Target:  5'- gGCGCggCGCUGGgacagCuUCGGCAAGuccGGCCg -3'
miRNA:   3'- -CGCGg-GCGACCa----GuAGCUGUUU---CUGG- -5'
26791 3' -53.7 NC_005808.1 + 30596 0.68 0.649434
Target:  5'- cCGCgCUGCUGGcCGaCGugGAaaAGGCCa -3'
miRNA:   3'- cGCG-GGCGACCaGUaGCugUU--UCUGG- -5'
26791 3' -53.7 NC_005808.1 + 4970 0.68 0.649434
Target:  5'- uCGCgCUGCUGGUCAguuccaGACGuuGGCg -3'
miRNA:   3'- cGCG-GGCGACCAGUag----CUGUuuCUGg -5'
26791 3' -53.7 NC_005808.1 + 13928 0.68 0.649434
Target:  5'- cGCGCCgCGCUGGcgaggcCGcCGGCAccGAUCu -3'
miRNA:   3'- -CGCGG-GCGACCa-----GUaGCUGUuuCUGG- -5'
26791 3' -53.7 NC_005808.1 + 5056 0.68 0.648312
Target:  5'- gGCGaCCGCUGcauugauGUUGUCGGCAuugccGACCg -3'
miRNA:   3'- -CGCgGGCGAC-------CAGUAGCUGUuu---CUGG- -5'
26791 3' -53.7 NC_005808.1 + 19618 0.68 0.638205
Target:  5'- cCGUCCGg-GGUCAUgcgggccgCGACAucGGCCa -3'
miRNA:   3'- cGCGGGCgaCCAGUA--------GCUGUuuCUGG- -5'
26791 3' -53.7 NC_005808.1 + 37757 0.68 0.638205
Target:  5'- gGCaaCCuaUGGUCAUCGACuacggcGACCu -3'
miRNA:   3'- -CGcgGGcgACCAGUAGCUGuuu---CUGG- -5'
26791 3' -53.7 NC_005808.1 + 34087 0.68 0.638205
Target:  5'- uCGCCgGCgacaucaagGG-CAUCGACGuGGACUa -3'
miRNA:   3'- cGCGGgCGa--------CCaGUAGCUGUuUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 34550 0.68 0.638205
Target:  5'- gGCGCgCGUcaUGGaCggCGGCAAGGACg -3'
miRNA:   3'- -CGCGgGCG--ACCaGuaGCUGUUUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.