miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26791 5' -61.2 NC_005808.1 + 42042 0.66 0.330671
Target:  5'- aUGGUCGAGGCG--UGGUuuuucagcGGCCCg- -3'
miRNA:   3'- gACCGGCUCCGCcuACCGu-------UCGGGau -5'
26791 5' -61.2 NC_005808.1 + 8813 0.66 0.32273
Target:  5'- --cGUCGAGGCGGuacuUGGUGucGGCCUUGa -3'
miRNA:   3'- gacCGGCUCCGCCu---ACCGU--UCGGGAU- -5'
26791 5' -61.2 NC_005808.1 + 32469 0.66 0.306519
Target:  5'- aCU-GCCGAGGUGGG-GGCGGccgaugcGCCCg- -3'
miRNA:   3'- -GAcCGGCUCCGCCUaCCGUU-------CGGGau -5'
26791 5' -61.2 NC_005808.1 + 36807 0.66 0.299021
Target:  5'- gCUGGCgcugccgCGAuGGCGGGacacgaUGGUcaAGGCCCUGg -3'
miRNA:   3'- -GACCG-------GCU-CCGCCU------ACCG--UUCGGGAU- -5'
26791 5' -61.2 NC_005808.1 + 4043 0.66 0.285169
Target:  5'- -cGGCCGcGGCGagcGGCAGGCCa-- -3'
miRNA:   3'- gaCCGGCuCCGCcuaCCGUUCGGgau -5'
26791 5' -61.2 NC_005808.1 + 17263 0.67 0.277383
Target:  5'- aCUGGCCGGccuggacaaucccGGCGacgagcgccGGUGGCAGGgCCg- -3'
miRNA:   3'- -GACCGGCU-------------CCGC---------CUACCGUUCgGGau -5'
26791 5' -61.2 NC_005808.1 + 40568 0.67 0.264336
Target:  5'- --cGCCGAGGCGGccGGUAuGCCg-- -3'
miRNA:   3'- gacCGGCUCCGCCuaCCGUuCGGgau -5'
26791 5' -61.2 NC_005808.1 + 10841 0.67 0.251144
Target:  5'- -cGGUCuuGAGGUGGucgaGCAGGCCCUGc -3'
miRNA:   3'- gaCCGG--CUCCGCCuac-CGUUCGGGAU- -5'
26791 5' -61.2 NC_005808.1 + 21268 0.67 0.244754
Target:  5'- cCUGGgCGcGGUGGccGGCAucaAGCCCg- -3'
miRNA:   3'- -GACCgGCuCCGCCuaCCGU---UCGGGau -5'
26791 5' -61.2 NC_005808.1 + 41920 0.67 0.244754
Target:  5'- -cGGCCGgcgccgccguAGGCGGccugGUGGCuacAGCCUUGg -3'
miRNA:   3'- gaCCGGC----------UCCGCC----UACCGu--UCGGGAU- -5'
26791 5' -61.2 NC_005808.1 + 4363 0.68 0.23238
Target:  5'- -cGGCCGgacggcAGGCGGAUGcGC-AGCCa-- -3'
miRNA:   3'- gaCCGGC------UCCGCCUAC-CGuUCGGgau -5'
26791 5' -61.2 NC_005808.1 + 17868 0.68 0.226393
Target:  5'- -aGGCCGcgcAGGCGcGGUGGaagcGGCCCg- -3'
miRNA:   3'- gaCCGGC---UCCGC-CUACCgu--UCGGGau -5'
26791 5' -61.2 NC_005808.1 + 23440 0.69 0.198393
Target:  5'- -cGGCCGGGauGCGGAUGGUucGCgCg- -3'
miRNA:   3'- gaCCGGCUC--CGCCUACCGuuCGgGau -5'
26791 5' -61.2 NC_005808.1 + 35806 0.69 0.185059
Target:  5'- cCUGGCUGAccaGGCGGucauagauucccaggGUGGCGGGCaaaCUAa -3'
miRNA:   3'- -GACCGGCU---CCGCC---------------UACCGUUCGg--GAU- -5'
26791 5' -61.2 NC_005808.1 + 35374 0.7 0.160312
Target:  5'- gUGGCCGAaguugcagGGCuucaucacgcaguccGAUGGCAAGCCCa- -3'
miRNA:   3'- gACCGGCU--------CCGc--------------CUACCGUUCGGGau -5'
26791 5' -61.2 NC_005808.1 + 16245 0.72 0.114677
Target:  5'- -cGGCaCGAuauGGCGGAUGGCGuuGGCCUc- -3'
miRNA:   3'- gaCCG-GCU---CCGCCUACCGU--UCGGGau -5'
26791 5' -61.2 NC_005808.1 + 9861 0.75 0.070741
Target:  5'- uUGGUgGGGGCGGucAUGGCGucAGCCCUc -3'
miRNA:   3'- gACCGgCUCCGCC--UACCGU--UCGGGAu -5'
26791 5' -61.2 NC_005808.1 + 36025 1.06 0.000254
Target:  5'- cCUGGCCGAGGCGGAUGGCAAGCCCUAc -3'
miRNA:   3'- -GACCGGCUCCGCCUACCGUUCGGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.