miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26792 5' -60 NC_005808.1 + 21179 0.69 0.259015
Target:  5'- cGGCCugcUGCGCGGCcUGCuGcuggUCUGCg -3'
miRNA:   3'- cCCGG---ACGCGCCGcACGuCaa--GGACG- -5'
26792 5' -60 NC_005808.1 + 32922 0.69 0.239903
Target:  5'- cGGCCUGCaCGGCG-GCuGUUCg-GCc -3'
miRNA:   3'- cCCGGACGcGCCGCaCGuCAAGgaCG- -5'
26792 5' -60 NC_005808.1 + 15310 0.7 0.227826
Target:  5'- -aGCCUucgccaaggcGCGCGGCGaacUGCGGUUCaUUGCc -3'
miRNA:   3'- ccCGGA----------CGCGCCGC---ACGUCAAG-GACG- -5'
26792 5' -60 NC_005808.1 + 14345 0.7 0.216268
Target:  5'- cGGGCCUGC-UGGUucGCGGUgUCCUGg -3'
miRNA:   3'- -CCCGGACGcGCCGcaCGUCA-AGGACg -5'
26792 5' -60 NC_005808.1 + 11423 0.7 0.216268
Target:  5'- cGGCgaGC-CGGCGUGCAGgucgCCgauaagGCg -3'
miRNA:   3'- cCCGgaCGcGCCGCACGUCaa--GGa-----CG- -5'
26792 5' -60 NC_005808.1 + 12576 0.71 0.199874
Target:  5'- gGGGCaccaaggGCGCGGcCGUGCAGUUggaGCa -3'
miRNA:   3'- -CCCGga-----CGCGCC-GCACGUCAAggaCG- -5'
26792 5' -60 NC_005808.1 + 8143 0.71 0.199874
Target:  5'- uGGGCgUGCGgguguCGGCGcUGC-GUcCCUGCg -3'
miRNA:   3'- -CCCGgACGC-----GCCGC-ACGuCAaGGACG- -5'
26792 5' -60 NC_005808.1 + 8331 0.71 0.174486
Target:  5'- gGGGaaagUUGCGCGuGCGUGCucaugccAGUaccUCCUGCg -3'
miRNA:   3'- -CCCg---GACGCGC-CGCACG-------UCA---AGGACG- -5'
26792 5' -60 NC_005808.1 + 22881 0.72 0.152841
Target:  5'- aGGGCgaUGCGCGGCGccucuaUGCAGcUUCCa-- -3'
miRNA:   3'- -CCCGg-ACGCGCCGC------ACGUC-AAGGacg -5'
26792 5' -60 NC_005808.1 + 9201 0.72 0.152841
Target:  5'- uGGCCUGCuCGGCGgcGCGGcgcacgUUCUGCg -3'
miRNA:   3'- cCCGGACGcGCCGCa-CGUCa-----AGGACG- -5'
26792 5' -60 NC_005808.1 + 15131 0.73 0.138522
Target:  5'- uGGuGCgUGCGCGGCGcGCuggcauaccagcgccAGggCCUGCg -3'
miRNA:   3'- -CC-CGgACGCGCCGCaCG---------------UCaaGGACG- -5'
26792 5' -60 NC_005808.1 + 14899 0.74 0.114151
Target:  5'- aGGGUCUGCGCGGCGaucUGCugcuggccggccucaAGUgccgaCUGCg -3'
miRNA:   3'- -CCCGGACGCGCCGC---ACG---------------UCAag---GACG- -5'
26792 5' -60 NC_005808.1 + 6242 0.75 0.09543
Target:  5'- aGGGCCUGCacgcCGGUaacgGUGCGGUUgaUCUGCg -3'
miRNA:   3'- -CCCGGACGc---GCCG----CACGUCAA--GGACG- -5'
26792 5' -60 NC_005808.1 + 39062 0.75 0.092781
Target:  5'- cGGGaCUGCGCGGUGUGCGG---CUGUa -3'
miRNA:   3'- -CCCgGACGCGCCGCACGUCaagGACG- -5'
26792 5' -60 NC_005808.1 + 33204 0.77 0.07189
Target:  5'- cGGCCUGCGCGaCaUGCAGUggCUGCa -3'
miRNA:   3'- cCCGGACGCGCcGcACGUCAagGACG- -5'
26792 5' -60 NC_005808.1 + 11516 0.77 0.069868
Target:  5'- -cGCCUGCGCuGGCGUG-AGgcCCUGCg -3'
miRNA:   3'- ccCGGACGCG-CCGCACgUCaaGGACG- -5'
26792 5' -60 NC_005808.1 + 37464 0.77 0.062317
Target:  5'- -cGCCUGCGCGGCacguUGCAGUUCaacgGCg -3'
miRNA:   3'- ccCGGACGCGCCGc---ACGUCAAGga--CG- -5'
26792 5' -60 NC_005808.1 + 36123 1.14 0.000105
Target:  5'- cGGGCCUGCGCGGCGUGCAGUUCCUGCg -3'
miRNA:   3'- -CCCGGACGCGCCGCACGUCAAGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.