miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26793 3' -60.8 NC_005808.1 + 13513 0.66 0.399406
Target:  5'- aCGGGccUGA-CCUCGGCGCCCgAGg -3'
miRNA:   3'- gGCCUcuAUUcGGGGCCGCGGGgUCg -5'
26793 3' -60.8 NC_005808.1 + 12124 0.66 0.399406
Target:  5'- -aGcAGGUGAcGCgaugaCCGGCGCCCCcuGGCa -3'
miRNA:   3'- ggCcUCUAUU-CGg----GGCCGCGGGG--UCG- -5'
26793 3' -60.8 NC_005808.1 + 15939 0.66 0.390539
Target:  5'- ----cGAUAGGCUgCGGCGCCUUcGCg -3'
miRNA:   3'- ggccuCUAUUCGGgGCCGCGGGGuCG- -5'
26793 3' -60.8 NC_005808.1 + 31210 0.66 0.387028
Target:  5'- aCGGucGAgggcgaaagcaugAAGaaCCCCGGCGCgcggCCCAGCu -3'
miRNA:   3'- gGCCu-CUa------------UUC--GGGGCCGCG----GGGUCG- -5'
26793 3' -60.8 NC_005808.1 + 12979 0.66 0.381801
Target:  5'- cCCGGccacAAGCgCCCGGCGCUggacaaCUGGCa -3'
miRNA:   3'- -GGCCucuaUUCG-GGGCCGCGG------GGUCG- -5'
26793 3' -60.8 NC_005808.1 + 13238 0.66 0.368094
Target:  5'- gCUGGGGcaAGGCCaCCGGCGCgUgguucgaggacuuggCCGGCg -3'
miRNA:   3'- -GGCCUCuaUUCGG-GGCCGCG-G---------------GGUCG- -5'
26793 3' -60.8 NC_005808.1 + 19032 0.66 0.36472
Target:  5'- gCGGu----AGCCCUGGUagcgGCCgCCGGCg -3'
miRNA:   3'- gGCCucuauUCGGGGCCG----CGG-GGUCG- -5'
26793 3' -60.8 NC_005808.1 + 10228 0.66 0.36472
Target:  5'- gCUGGGcGGccgGGGCCUCGGCGgcgaCCgCAGCg -3'
miRNA:   3'- -GGCCU-CUa--UUCGGGGCCGCg---GG-GUCG- -5'
26793 3' -60.8 NC_005808.1 + 36227 0.67 0.348176
Target:  5'- gCCGaccuGGUGuaaCCCaGCGCCCCGGCc -3'
miRNA:   3'- -GGCcu--CUAUucgGGGcCGCGGGGUCG- -5'
26793 3' -60.8 NC_005808.1 + 8869 0.67 0.332174
Target:  5'- aCGGugcGGUAgcguucGGCCuuGGCGUCCCAc- -3'
miRNA:   3'- gGCCu--CUAU------UCGGggCCGCGGGGUcg -5'
26793 3' -60.8 NC_005808.1 + 167 0.67 0.324378
Target:  5'- -aGGcGGAUGcGCCCCGGUGUCgCugGGCa -3'
miRNA:   3'- ggCC-UCUAUuCGGGGCCGCGGgG--UCG- -5'
26793 3' -60.8 NC_005808.1 + 2727 0.67 0.324378
Target:  5'- gCCGGAcgcuUGAGCgcggCCCGGCGCUgCucgGGCg -3'
miRNA:   3'- -GGCCUcu--AUUCG----GGGCCGCGGgG---UCG- -5'
26793 3' -60.8 NC_005808.1 + 30068 0.67 0.313693
Target:  5'- gCCGGAaAUAuccuuugugcggcGCCCgGGCGCCaCGGCc -3'
miRNA:   3'- -GGCCUcUAUu------------CGGGgCCGCGGgGUCG- -5'
26793 3' -60.8 NC_005808.1 + 25299 0.68 0.287451
Target:  5'- gCCGGAaugGAUGcgcGCCCgCGGCGCCggcuucguggaCGGCa -3'
miRNA:   3'- -GGCCU---CUAUu--CGGG-GCCGCGGg----------GUCG- -5'
26793 3' -60.8 NC_005808.1 + 3741 0.68 0.280475
Target:  5'- gCCGGuGGUGGGCacgUCGGUGCCgCC-GCu -3'
miRNA:   3'- -GGCCuCUAUUCGg--GGCCGCGG-GGuCG- -5'
26793 3' -60.8 NC_005808.1 + 24513 0.69 0.252642
Target:  5'- cCUGGuucgcgccGGCUUCGGCGgCCCAGCa -3'
miRNA:   3'- -GGCCucuau---UCGGGGCCGCgGGGUCG- -5'
26793 3' -60.8 NC_005808.1 + 35521 0.69 0.229455
Target:  5'- gCCGuGGGUAGGCCgCGGCGUcaugaaguaCCUGGCc -3'
miRNA:   3'- -GGCcUCUAUUCGGgGCCGCG---------GGGUCG- -5'
26793 3' -60.8 NC_005808.1 + 33850 0.7 0.22366
Target:  5'- gCGGcacGUGAauacgcgcgcGCCCUGGUGUCCCGGCu -3'
miRNA:   3'- gGCCuc-UAUU----------CGGGGCCGCGGGGUCG- -5'
26793 3' -60.8 NC_005808.1 + 7771 0.7 0.217429
Target:  5'- aCCGGcgcGAUcuGCgCCGGCGUccacccuucgccgCCCAGCa -3'
miRNA:   3'- -GGCCu--CUAuuCGgGGCCGCG-------------GGGUCG- -5'
26793 3' -60.8 NC_005808.1 + 6739 0.7 0.201711
Target:  5'- aCGGcGuc-GGCCuuGGCGCCCCAc- -3'
miRNA:   3'- gGCCuCuauUCGGggCCGCGGGGUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.