miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26793 5' -52.9 NC_005808.1 + 4570 0.68 0.66909
Target:  5'- uCGCCGAGGCGcugcucgguGCGCCAggcgagGAaCUGCUc -3'
miRNA:   3'- uGUGGCUCUGU---------UGCGGUa-----CUgGAUGA- -5'
26793 5' -52.9 NC_005808.1 + 25661 0.81 0.117873
Target:  5'- cACGCUGcuGGACGGCGCCGUGcCCUACg -3'
miRNA:   3'- -UGUGGC--UCUGUUGCGGUACuGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 37843 0.72 0.389029
Target:  5'- aACGCCGAGaACAucGCgGCCGUGGCCg--- -3'
miRNA:   3'- -UGUGGCUC-UGU--UG-CGGUACUGGauga -5'
26793 5' -52.9 NC_005808.1 + 37290 0.68 0.623396
Target:  5'- -gGCCGGcGACcuggaaaauaucGACGCCGUGGCCgACa -3'
miRNA:   3'- ugUGGCU-CUG------------UUGCGGUACUGGaUGa -5'
26793 5' -52.9 NC_005808.1 + 5753 0.68 0.634835
Target:  5'- cGCGCCGGGcaGCGaguGCGCCAgGGCCUugACc -3'
miRNA:   3'- -UGUGGCUC--UGU---UGCGGUaCUGGA--UGa -5'
26793 5' -52.9 NC_005808.1 + 1747 0.72 0.408043
Target:  5'- aACACCGGGcgguCAugGCC--GGCCUGCg -3'
miRNA:   3'- -UGUGGCUCu---GUugCGGuaCUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 41961 0.69 0.577827
Target:  5'- gGCACCGAcucGACGccggACGCCGUGuCCacgGCg -3'
miRNA:   3'- -UGUGGCU---CUGU----UGCGGUACuGGa--UGa -5'
26793 5' -52.9 NC_005808.1 + 23216 0.68 0.611965
Target:  5'- uACGCCGAagugGACAAgGCCcUGGCCgACc -3'
miRNA:   3'- -UGUGGCU----CUGUUgCGGuACUGGaUGa -5'
26793 5' -52.9 NC_005808.1 + 34829 0.68 0.646271
Target:  5'- gACGCCGGcGCAgaucGCGCCG-GugCUGCa -3'
miRNA:   3'- -UGUGGCUcUGU----UGCGGUaCugGAUGa -5'
26793 5' -52.9 NC_005808.1 + 18879 0.67 0.680449
Target:  5'- cCACCGAGGCAcugGC-CCGcGACCUGg- -3'
miRNA:   3'- uGUGGCUCUGU---UGcGGUaCUGGAUga -5'
26793 5' -52.9 NC_005808.1 + 14560 0.66 0.778931
Target:  5'- uCGCCGAcguguucuucGGCGACGCCGacaUGAUCgGCUu -3'
miRNA:   3'- uGUGGCU----------CUGUUGCGGU---ACUGGaUGA- -5'
26793 5' -52.9 NC_005808.1 + 835 0.71 0.447758
Target:  5'- cGCGCaGAGACAGCGagccgaCCGUGGCCUGu- -3'
miRNA:   3'- -UGUGgCUCUGUUGC------GGUACUGGAUga -5'
26793 5' -52.9 NC_005808.1 + 15145 0.71 0.447758
Target:  5'- cGCGCUGGcauacCAGCGCCAgGGCCUGCg -3'
miRNA:   3'- -UGUGGCUcu---GUUGCGGUaCUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 15771 0.68 0.646271
Target:  5'- cCAUCGGGGCGGCGCa---GCCUGCc -3'
miRNA:   3'- uGUGGCUCUGUUGCGguacUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 26171 0.68 0.646271
Target:  5'- aACGCCGccGGCGAUuaccccgcgGCCGUGuCCUACUu -3'
miRNA:   3'- -UGUGGCu-CUGUUG---------CGGUACuGGAUGA- -5'
26793 5' -52.9 NC_005808.1 + 14638 0.69 0.577827
Target:  5'- cCACCGAgGACGugcuCGCCAUccCCUACg -3'
miRNA:   3'- uGUGGCU-CUGUu---GCGGUAcuGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 26534 0.68 0.66909
Target:  5'- gGCGCCGcGcGCGGCgGCCAcgugcgcgaacUGGCCUACa -3'
miRNA:   3'- -UGUGGCuC-UGUUG-CGGU-----------ACUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 18018 0.67 0.691759
Target:  5'- cACGCCG-GACGGCccgaCCGUGGCCgGCc -3'
miRNA:   3'- -UGUGGCuCUGUUGc---GGUACUGGaUGa -5'
26793 5' -52.9 NC_005808.1 + 27031 0.69 0.600554
Target:  5'- cGCGUCGucacuGACGGCGCCAUuGACCUGg- -3'
miRNA:   3'- -UGUGGCu----CUGUUGCGGUA-CUGGAUga -5'
26793 5' -52.9 NC_005808.1 + 14779 0.68 0.646271
Target:  5'- cCACCGcGGGCAGCGCgCGcgagGACgUGCUg -3'
miRNA:   3'- uGUGGC-UCUGUUGCG-GUa---CUGgAUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.