miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26793 5' -52.9 NC_005808.1 + 15771 0.68 0.646271
Target:  5'- cCAUCGGGGCGGCGCa---GCCUGCc -3'
miRNA:   3'- uGUGGCUCUGUUGCGguacUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 16004 0.67 0.701885
Target:  5'- cGCGCaGGGACAGguCGCCGgugacgaaaccguUGGCCUGCc -3'
miRNA:   3'- -UGUGgCUCUGUU--GCGGU-------------ACUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 17292 0.66 0.768476
Target:  5'- aGCGCCGGuGGCAGgGCCGgccgcacGACCUcaagGCa -3'
miRNA:   3'- -UGUGGCU-CUGUUgCGGUa------CUGGA----UGa -5'
26793 5' -52.9 NC_005808.1 + 17453 0.76 0.232439
Target:  5'- aGCAUCGAGGCcaggugccACGCCAgGGCCUGCa -3'
miRNA:   3'- -UGUGGCUCUGu-------UGCGGUaCUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 18018 0.67 0.691759
Target:  5'- cACGCCG-GACGGCccgaCCGUGGCCgGCc -3'
miRNA:   3'- -UGUGGCuCUGUUGc---GGUACUGGaUGa -5'
26793 5' -52.9 NC_005808.1 + 18879 0.67 0.680449
Target:  5'- cCACCGAGGCAcugGC-CCGcGACCUGg- -3'
miRNA:   3'- uGUGGCUCUGU---UGcGGUaCUGGAUga -5'
26793 5' -52.9 NC_005808.1 + 19394 0.67 0.713066
Target:  5'- -gGCCGAauucaccGACGAgGCC--GACCUGCUg -3'
miRNA:   3'- ugUGGCU-------CUGUUgCGGuaCUGGAUGA- -5'
26793 5' -52.9 NC_005808.1 + 23216 0.68 0.611965
Target:  5'- uACGCCGAagugGACAAgGCCcUGGCCgACc -3'
miRNA:   3'- -UGUGGCU----CUGUUgCGGuACUGGaUGa -5'
26793 5' -52.9 NC_005808.1 + 23468 0.67 0.690631
Target:  5'- cACGCCGGcGugGaacagguGCGCCGUgggaaucucGACCUGCg -3'
miRNA:   3'- -UGUGGCU-CugU-------UGCGGUA---------CUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 24466 0.66 0.747122
Target:  5'- gACGCCGAcGACc-UGCUgcuUGGCCUGCg -3'
miRNA:   3'- -UGUGGCU-CUGuuGCGGu--ACUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 25661 0.81 0.117873
Target:  5'- cACGCUGcuGGACGGCGCCGUGcCCUACg -3'
miRNA:   3'- -UGUGGC--UCUGUUGCGGUACuGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 26171 0.68 0.646271
Target:  5'- aACGCCGccGGCGAUuaccccgcgGCCGUGuCCUACUu -3'
miRNA:   3'- -UGUGGCu-CUGUUG---------CGGUACuGGAUGA- -5'
26793 5' -52.9 NC_005808.1 + 26534 0.68 0.66909
Target:  5'- gGCGCCGcGcGCGGCgGCCAcgugcgcgaacUGGCCUACa -3'
miRNA:   3'- -UGUGGCuC-UGUUG-CGGU-----------ACUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 27031 0.69 0.600554
Target:  5'- cGCGUCGucacuGACGGCGCCAUuGACCUGg- -3'
miRNA:   3'- -UGUGGCu----CUGUUGCGGUA-CUGGAUga -5'
26793 5' -52.9 NC_005808.1 + 27583 0.69 0.566533
Target:  5'- gGCACCGgcagcAGGCGGCGCCAgaUGGCgUGg- -3'
miRNA:   3'- -UGUGGC-----UCUGUUGCGGU--ACUGgAUga -5'
26793 5' -52.9 NC_005808.1 + 28956 0.67 0.714179
Target:  5'- gACAUgGAcGGCcGCGCCG-GACUUGCUg -3'
miRNA:   3'- -UGUGgCU-CUGuUGCGGUaCUGGAUGA- -5'
26793 5' -52.9 NC_005808.1 + 29090 0.67 0.703007
Target:  5'- gGCGCCGAGGuCAG-GCCcgugcggGACUUGCUg -3'
miRNA:   3'- -UGUGGCUCU-GUUgCGGua-----CUGGAUGA- -5'
26793 5' -52.9 NC_005808.1 + 29150 0.66 0.747122
Target:  5'- cGCGCCcGAGGC--CGCCAagcuggcgGGCCUGCc -3'
miRNA:   3'- -UGUGG-CUCUGuuGCGGUa-------CUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 30128 0.67 0.691759
Target:  5'- cGCGCC-AGAacACGCCGccGGCCUGCa -3'
miRNA:   3'- -UGUGGcUCUguUGCGGUa-CUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 31427 0.67 0.71418
Target:  5'- cCAUCaacGGCGACGCCAcGAUCUGCg -3'
miRNA:   3'- uGUGGcu-CUGUUGCGGUaCUGGAUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.