miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26793 5' -52.9 NC_005808.1 + 11499 0.72 0.437627
Target:  5'- gACACCGcaaaGGGCAGCGCCugcgcuggcGUGAggcCCUGCg -3'
miRNA:   3'- -UGUGGC----UCUGUUGCGG---------UACU---GGAUGa -5'
26793 5' -52.9 NC_005808.1 + 37589 0.7 0.52201
Target:  5'- gGCGCUGAaagcgGACuGCGCC--GACCUGCUg -3'
miRNA:   3'- -UGUGGCU-----CUGuUGCGGuaCUGGAUGA- -5'
26793 5' -52.9 NC_005808.1 + 27583 0.69 0.566533
Target:  5'- gGCACCGgcagcAGGCGGCGCCAgaUGGCgUGg- -3'
miRNA:   3'- -UGUGGC-----UCUGUUGCGGU--ACUGgAUga -5'
26793 5' -52.9 NC_005808.1 + 38030 0.69 0.577828
Target:  5'- cGCACCGAG-CAGCGCCucggcGACUUcgGCc -3'
miRNA:   3'- -UGUGGCUCuGUUGCGGua---CUGGA--UGa -5'
26793 5' -52.9 NC_005808.1 + 32586 0.68 0.634835
Target:  5'- gACACCGc--CGACGCUGUGACCaaGCUg -3'
miRNA:   3'- -UGUGGCucuGUUGCGGUACUGGa-UGA- -5'
26793 5' -52.9 NC_005808.1 + 34596 0.68 0.66909
Target:  5'- gGCGCCaaGGGCAcguccgACGCCGUgGugCUGCUg -3'
miRNA:   3'- -UGUGGc-UCUGU------UGCGGUA-CugGAUGA- -5'
26793 5' -52.9 NC_005808.1 + 37734 0.67 0.703007
Target:  5'- cGCGCUG-GGCAACGaCC-UGACCggGCa -3'
miRNA:   3'- -UGUGGCuCUGUUGC-GGuACUGGa-UGa -5'
26793 5' -52.9 NC_005808.1 + 19394 0.67 0.713066
Target:  5'- -gGCCGAauucaccGACGAgGCC--GACCUGCUg -3'
miRNA:   3'- ugUGGCU-------CUGUUgCGGuaCUGGAUGA- -5'
26793 5' -52.9 NC_005808.1 + 28956 0.67 0.714179
Target:  5'- gACAUgGAcGGCcGCGCCG-GACUUGCUg -3'
miRNA:   3'- -UGUGgCU-CUGuUGCGGUaCUGGAUGA- -5'
26793 5' -52.9 NC_005808.1 + 40163 0.67 0.714179
Target:  5'- gGCGCCGAucuuCGAgGCC--GGCCUGCUg -3'
miRNA:   3'- -UGUGGCUcu--GUUgCGGuaCUGGAUGA- -5'
26793 5' -52.9 NC_005808.1 + 33747 0.67 0.725265
Target:  5'- gGCgACCGAGGcCAACGCgcUGGCCcGCg -3'
miRNA:   3'- -UG-UGGCUCU-GUUGCGguACUGGaUGa -5'
26793 5' -52.9 NC_005808.1 + 35772 0.67 0.725265
Target:  5'- uCGCCGAgGGCAacgacgaaacccGCGCCGUGuCCcugGCUg -3'
miRNA:   3'- uGUGGCU-CUGU------------UGCGGUACuGGa--UGA- -5'
26793 5' -52.9 NC_005808.1 + 15089 0.66 0.73625
Target:  5'- cGCGCCGAGAagcuGGCgGCCGaGGCCgccgGCa -3'
miRNA:   3'- -UGUGGCUCUg---UUG-CGGUaCUGGa---UGa -5'
26793 5' -52.9 NC_005808.1 + 40548 0.66 0.746041
Target:  5'- gACcCCGAGGaauugcGCGCCGUGuucuaucGCCUGCg -3'
miRNA:   3'- -UGuGGCUCUgu----UGCGGUAC-------UGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 29150 0.66 0.747122
Target:  5'- cGCGCCcGAGGC--CGCCAagcuggcgGGCCUGCc -3'
miRNA:   3'- -UGUGG-CUCUGuuGCGGUa-------CUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 8444 0.66 0.757868
Target:  5'- aACAUCGGcGCGAUGUCGgcgucgaggUGGCCUGCg -3'
miRNA:   3'- -UGUGGCUcUGUUGCGGU---------ACUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 14399 0.66 0.757868
Target:  5'- -gGCCGAccugGACAagGCGCCGc-ACCUGCUg -3'
miRNA:   3'- ugUGGCU----CUGU--UGCGGUacUGGAUGA- -5'
26793 5' -52.9 NC_005808.1 + 32533 0.66 0.757868
Target:  5'- uCGCCccGACGACGCCucgGACgCUAUUg -3'
miRNA:   3'- uGUGGcuCUGUUGCGGua-CUG-GAUGA- -5'
26793 5' -52.9 NC_005808.1 + 13855 0.66 0.757868
Target:  5'- cGCACCGcgcuGGACGAUGCCAaGGCgCU-Ca -3'
miRNA:   3'- -UGUGGC----UCUGUUGCGGUaCUG-GAuGa -5'
26793 5' -52.9 NC_005808.1 + 35988 0.66 0.757868
Target:  5'- gGCGgCG-GACuACGCCAUGcUCUACg -3'
miRNA:   3'- -UGUgGCuCUGuUGCGGUACuGGAUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.