miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26794 3' -58.8 NC_005808.1 + 36788 1.11 0.000213
Target:  5'- aCGCCAUGCCCGACUAUCCGCUGGCGCu -3'
miRNA:   3'- -GCGGUACGGGCUGAUAGGCGACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 12724 0.75 0.120134
Target:  5'- uCGCCcgGCCCGuugguGCUGggugCCGCgcccagacgcuUGGCGCg -3'
miRNA:   3'- -GCGGuaCGGGC-----UGAUa---GGCG-----------ACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 6352 0.74 0.145829
Target:  5'- gCGCCcgGCCCGAagg-CCGg-GGCGCu -3'
miRNA:   3'- -GCGGuaCGGGCUgauaGGCgaCCGCG- -5'
26794 3' -58.8 NC_005808.1 + 28868 0.74 0.145829
Target:  5'- gCGCCGcGCCaCGucCUcgCUGCUGGCGUa -3'
miRNA:   3'- -GCGGUaCGG-GCu-GAuaGGCGACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 37911 0.73 0.171746
Target:  5'- gGCCAUucuCgCCGGCUAUCCggcgcGCUGGUGCc -3'
miRNA:   3'- gCGGUAc--G-GGCUGAUAGG-----CGACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 11579 0.72 0.181261
Target:  5'- aGCCAUGCcgcccagggccgCCGGCUggCCGCcgGGCaGCa -3'
miRNA:   3'- gCGGUACG------------GGCUGAuaGGCGa-CCG-CG- -5'
26794 3' -58.8 NC_005808.1 + 15160 0.72 0.181261
Target:  5'- gCGCCAggGCCUG-Cgg-CCGCcgGGCGCg -3'
miRNA:   3'- -GCGGUa-CGGGCuGauaGGCGa-CCGCG- -5'
26794 3' -58.8 NC_005808.1 + 35186 0.71 0.21265
Target:  5'- gGCCAuccggUGCCCGGCUucaaGCUGGUGg -3'
miRNA:   3'- gCGGU-----ACGGGCUGAuaggCGACCGCg -5'
26794 3' -58.8 NC_005808.1 + 41980 0.71 0.21265
Target:  5'- aCGCCGUGuCCaCGGCg--CUGCUGGC-Cg -3'
miRNA:   3'- -GCGGUAC-GG-GCUGauaGGCGACCGcG- -5'
26794 3' -58.8 NC_005808.1 + 29135 0.71 0.21265
Target:  5'- gGUCAUGCCCGACaccgcgCCcgaggccgccaaGCUGGCGg -3'
miRNA:   3'- gCGGUACGGGCUGaua---GG------------CGACCGCg -5'
26794 3' -58.8 NC_005808.1 + 26116 0.71 0.218315
Target:  5'- gCGCCAUG-CCGGCaugUGUUCGUcgcggcagauuUGGCGCa -3'
miRNA:   3'- -GCGGUACgGGCUG---AUAGGCG-----------ACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 36683 0.71 0.224109
Target:  5'- cCGCCAgcggcgaaaagaUGCCgGACgAUCUGCggugGGCGUu -3'
miRNA:   3'- -GCGGU------------ACGGgCUGaUAGGCGa---CCGCG- -5'
26794 3' -58.8 NC_005808.1 + 18924 0.7 0.242276
Target:  5'- uGUCcgGCCCGACcgagggUCGcCUGGUGCa -3'
miRNA:   3'- gCGGuaCGGGCUGaua---GGC-GACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 14875 0.7 0.248599
Target:  5'- gCGCCuuuaaguUGCCCGGCUuucaggGUCUGCgcGGCGa -3'
miRNA:   3'- -GCGGu------ACGGGCUGA------UAGGCGa-CCGCg -5'
26794 3' -58.8 NC_005808.1 + 27422 0.7 0.253755
Target:  5'- gCGCCuggcgcaccgcGCCCGGCgg-CCGCaggcccUGGCGCu -3'
miRNA:   3'- -GCGGua---------CGGGCUGauaGGCG------ACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 15121 0.7 0.261654
Target:  5'- uGCCuaccagGCCCGACcccaUGCUGGCGg -3'
miRNA:   3'- gCGGua----CGGGCUGauagGCGACCGCg -5'
26794 3' -58.8 NC_005808.1 + 29558 0.7 0.264331
Target:  5'- aCGCCGUGCUCGGgguaucgcgucagguCgg-CCGCgcccaGGCGCg -3'
miRNA:   3'- -GCGGUACGGGCU---------------GauaGGCGa----CCGCG- -5'
26794 3' -58.8 NC_005808.1 + 35094 0.7 0.275261
Target:  5'- aCGCCAUcCUCGGCaacCUGCUgGGCGCg -3'
miRNA:   3'- -GCGGUAcGGGCUGauaGGCGA-CCGCG- -5'
26794 3' -58.8 NC_005808.1 + 20766 0.69 0.289428
Target:  5'- gCGCCGcGCUCGACUcAUCgCGC-GGCuGCa -3'
miRNA:   3'- -GCGGUaCGGGCUGA-UAG-GCGaCCG-CG- -5'
26794 3' -58.8 NC_005808.1 + 29745 0.69 0.289428
Target:  5'- aCGCCGUagaacucgGCCuCGGCUG-CUGCcaGGCGCg -3'
miRNA:   3'- -GCGGUA--------CGG-GCUGAUaGGCGa-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.