miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26794 3' -58.8 NC_005808.1 + 12025 0.66 0.460831
Target:  5'- gGCCGUGgCCGGCgagGUCUugcccaGCgugucgaagucgaUGGCGCc -3'
miRNA:   3'- gCGGUACgGGCUGa--UAGG------CG-------------ACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 12449 0.67 0.421189
Target:  5'- cCGCUgAUGUCCGACgcggugcaggCCGgcggcguguuCUGGCGCg -3'
miRNA:   3'- -GCGG-UACGGGCUGaua-------GGC----------GACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 12724 0.75 0.120134
Target:  5'- uCGCCcgGCCCGuugguGCUGggugCCGCgcccagacgcuUGGCGCg -3'
miRNA:   3'- -GCGGuaCGGGC-----UGAUa---GGCG-----------ACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 13777 0.66 0.43258
Target:  5'- gGCCGcaaCCCGACgacggCgCGCUGGCuGCu -3'
miRNA:   3'- gCGGUac-GGGCUGaua--G-GCGACCG-CG- -5'
26794 3' -58.8 NC_005808.1 + 14875 0.7 0.248599
Target:  5'- gCGCCuuuaaguUGCCCGGCUuucaggGUCUGCgcGGCGa -3'
miRNA:   3'- -GCGGu------ACGGGCUGA------UAGGCGa-CCGCg -5'
26794 3' -58.8 NC_005808.1 + 14884 0.69 0.289428
Target:  5'- aGuCCAUGaCCGGCggcgagCCGCUgccGGCGCg -3'
miRNA:   3'- gC-GGUACgGGCUGaua---GGCGA---CCGCG- -5'
26794 3' -58.8 NC_005808.1 + 15121 0.7 0.261654
Target:  5'- uGCCuaccagGCCCGACcccaUGCUGGCGg -3'
miRNA:   3'- gCGGua----CGGGCUGauagGCGACCGCg -5'
26794 3' -58.8 NC_005808.1 + 15160 0.72 0.181261
Target:  5'- gCGCCAggGCCUG-Cgg-CCGCcgGGCGCg -3'
miRNA:   3'- -GCGGUa-CGGGCuGauaGGCGa-CCGCG- -5'
26794 3' -58.8 NC_005808.1 + 16467 0.69 0.296723
Target:  5'- gCGCCAaaucUGCCgCGACgaacacaugCCGgcaUGGCGCa -3'
miRNA:   3'- -GCGGU----ACGG-GCUGaua------GGCg--ACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 17280 0.67 0.423075
Target:  5'- uGCCGUccacGaagCCGGCg--CCGCgGGCGCg -3'
miRNA:   3'- gCGGUA----Cg--GGCUGauaGGCGaCCGCG- -5'
26794 3' -58.8 NC_005808.1 + 18104 0.67 0.423075
Target:  5'- gCGCCA-GCCCcuacGACU--UC-CUGGCGCa -3'
miRNA:   3'- -GCGGUaCGGG----CUGAuaGGcGACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 18684 0.68 0.368783
Target:  5'- aCGCCuAUG-CCGGCaUGgaagCCGCgGGCGUg -3'
miRNA:   3'- -GCGG-UACgGGCUG-AUa---GGCGaCCGCG- -5'
26794 3' -58.8 NC_005808.1 + 18759 0.66 0.4718
Target:  5'- uCGCC-UGCCUG-CUgGUCaCGCcGGUGCc -3'
miRNA:   3'- -GCGGuACGGGCuGA-UAG-GCGaCCGCG- -5'
26794 3' -58.8 NC_005808.1 + 18924 0.7 0.242276
Target:  5'- uGUCcgGCCCGACcgagggUCGcCUGGUGCa -3'
miRNA:   3'- gCGGuaCGGGCUGaua---GGC-GACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 19484 0.67 0.395327
Target:  5'- aGCCGUuaCCG-CUGUcgCCGUgGGCGCc -3'
miRNA:   3'- gCGGUAcgGGCuGAUA--GGCGaCCGCG- -5'
26794 3' -58.8 NC_005808.1 + 20727 0.67 0.377494
Target:  5'- -cCCAUcaGgCCGACaugCUGCUGGCGCc -3'
miRNA:   3'- gcGGUA--CgGGCUGauaGGCGACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 20766 0.69 0.289428
Target:  5'- gCGCCGcGCUCGACUcAUCgCGC-GGCuGCa -3'
miRNA:   3'- -GCGGUaCGGGCUGA-UAG-GCGaCCG-CG- -5'
26794 3' -58.8 NC_005808.1 + 22814 0.68 0.342665
Target:  5'- uGCCGgacugGCCCGACUucgCCGCgcUGccgacagccgacaGCGCg -3'
miRNA:   3'- gCGGUa----CGGGCUGAua-GGCG--AC-------------CGCG- -5'
26794 3' -58.8 NC_005808.1 + 23233 0.65 0.477839
Target:  5'- gGCCcUGgCCGACcucaacggcaauUCCGCcgccUGGCGCc -3'
miRNA:   3'- gCGGuACgGGCUGau----------AGGCG----ACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 24422 0.67 0.413696
Target:  5'- aGCCG-GCCCGAuUUGUCgGUgccGCGCg -3'
miRNA:   3'- gCGGUaCGGGCU-GAUAGgCGac-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.