miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26795 3' -52.1 NC_005808.1 + 36919 0.94 0.013389
Target:  5'- gACAAGG-CGGCAAGCAGCUAAUCAUGc -3'
miRNA:   3'- -UGUUCCgGCCGUUCGUCGAUUAGUAC- -5'
26795 3' -52.1 NC_005808.1 + 24309 0.8 0.140603
Target:  5'- -uGAGGUCGGCGAGCAGCcgcgGGUCAg- -3'
miRNA:   3'- ugUUCCGGCCGUUCGUCGa---UUAGUac -5'
26795 3' -52.1 NC_005808.1 + 27689 0.79 0.158107
Target:  5'- -uGAGGCCGGCcAGCAGCaGAUCGc- -3'
miRNA:   3'- ugUUCCGGCCGuUCGUCGaUUAGUac -5'
26795 3' -52.1 NC_005808.1 + 24333 0.73 0.342748
Target:  5'- ---cGGCCGGCAAGUucucGGCgcaGGUCGUGa -3'
miRNA:   3'- uguuCCGGCCGUUCG----UCGa--UUAGUAC- -5'
26795 3' -52.1 NC_005808.1 + 32081 0.73 0.351611
Target:  5'- aGCGuGGCCGGCGgucAGCAGUUcGAUCAa- -3'
miRNA:   3'- -UGUuCCGGCCGU---UCGUCGA-UUAGUac -5'
26795 3' -52.1 NC_005808.1 + 27697 0.72 0.417078
Target:  5'- uACAGGccgcgcGCCGGC-AGCGGCUcgccgccGGUCAUGg -3'
miRNA:   3'- -UGUUC------CGGCCGuUCGUCGA-------UUAGUAC- -5'
26795 3' -52.1 NC_005808.1 + 242 0.69 0.559125
Target:  5'- gUAGGGCCGGCG-GUAGCgAAUCc-- -3'
miRNA:   3'- uGUUCCGGCCGUuCGUCGaUUAGuac -5'
26795 3' -52.1 NC_005808.1 + 16899 0.69 0.570651
Target:  5'- cGCGGGGCUGGUauGAGCAGCg------- -3'
miRNA:   3'- -UGUUCCGGCCG--UUCGUCGauuaguac -5'
26795 3' -52.1 NC_005808.1 + 6203 0.69 0.582235
Target:  5'- uGCAGGuGaCGGCGcGCGGCUccuGGUCGUGg -3'
miRNA:   3'- -UGUUC-CgGCCGUuCGUCGA---UUAGUAC- -5'
26795 3' -52.1 NC_005808.1 + 2592 0.69 0.582235
Target:  5'- uGCAAGGCCaGCAGGuUGGCgagGUCGUa -3'
miRNA:   3'- -UGUUCCGGcCGUUC-GUCGau-UAGUAc -5'
26795 3' -52.1 NC_005808.1 + 27487 0.68 0.617226
Target:  5'- --cGGGCCuGGUAGGCAGCUAuuacggcgcgcgGUCGc- -3'
miRNA:   3'- uguUCCGG-CCGUUCGUCGAU------------UAGUac -5'
26795 3' -52.1 NC_005808.1 + 274 0.68 0.617226
Target:  5'- -uGAGGCaCGGCGuccAGUAGCUGcgCcgGa -3'
miRNA:   3'- ugUUCCG-GCCGU---UCGUCGAUuaGuaC- -5'
26795 3' -52.1 NC_005808.1 + 24220 0.68 0.617226
Target:  5'- -aAAGuCCGGCGAGCGGCcGAUCu-- -3'
miRNA:   3'- ugUUCcGGCCGUUCGUCGaUUAGuac -5'
26795 3' -52.1 NC_005808.1 + 17475 0.68 0.627763
Target:  5'- cCAGGGCCuGCAcgaacAGCGGCgagaacuUGGUCGUGu -3'
miRNA:   3'- uGUUCCGGcCGU-----UCGUCG-------AUUAGUAC- -5'
26795 3' -52.1 NC_005808.1 + 4700 0.68 0.628934
Target:  5'- gGCGAgaauGGCCGGCAAGUuguuGGCUgcuucGAUgAUGa -3'
miRNA:   3'- -UGUU----CCGGCCGUUCG----UCGA-----UUAgUAC- -5'
26795 3' -52.1 NC_005808.1 + 19260 0.68 0.628934
Target:  5'- gGCGAGGCCGuCGAauugcGCGGCUAccacGUCAUc -3'
miRNA:   3'- -UGUUCCGGCcGUU-----CGUCGAU----UAGUAc -5'
26795 3' -52.1 NC_005808.1 + 34401 0.68 0.639474
Target:  5'- uACGAGGCCGuGCGcgaugaaaucgccGGCAGC--AUCcgGg -3'
miRNA:   3'- -UGUUCCGGC-CGU-------------UCGUCGauUAGuaC- -5'
26795 3' -52.1 NC_005808.1 + 1038 0.68 0.640646
Target:  5'- cCAcGGCCGGCG-GCAGCauGUCGc- -3'
miRNA:   3'- uGUuCCGGCCGUuCGUCGauUAGUac -5'
26795 3' -52.1 NC_005808.1 + 13308 0.68 0.640646
Target:  5'- cCGGGGCCGGCGuuguaGGCGGCguaggcuuUCGg- -3'
miRNA:   3'- uGUUCCGGCCGU-----UCGUCGauu-----AGUac -5'
26795 3' -52.1 NC_005808.1 + 611 0.68 0.652348
Target:  5'- --cGGGUCGGCcAGCAGCgc--CGUGg -3'
miRNA:   3'- uguUCCGGCCGuUCGUCGauuaGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.