Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26795 | 5' | -58.9 | NC_005808.1 | + | 36955 | 1.11 | 0.000178 |
Target: 5'- aACCGCGUCCAGCCACCAGCAAGCUGCg -3' miRNA: 3'- -UGGCGCAGGUCGGUGGUCGUUCGACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 4787 | 0.8 | 0.042995 |
Target: 5'- cACUGCGcCCAGCaCGCCGGCuggcGCUGCg -3' miRNA: 3'- -UGGCGCaGGUCG-GUGGUCGuu--CGACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 4015 | 0.77 | 0.068655 |
Target: 5'- -aCGCG-CCGGCCACCAGCGucauGCcGCg -3' miRNA: 3'- ugGCGCaGGUCGGUGGUCGUu---CGaCG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 7785 | 0.76 | 0.084058 |
Target: 5'- cGCCgGCGUCCAcccuucGCCGcCCAGCAGGC-GCu -3' miRNA: 3'- -UGG-CGCAGGU------CGGU-GGUCGUUCGaCG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 21753 | 0.76 | 0.084058 |
Target: 5'- gGCCGCGUCCacauaggacaGGCCGCCcGGCAcGgUGCu -3' miRNA: 3'- -UGGCGCAGG----------UCGGUGG-UCGUuCgACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 27432 | 0.76 | 0.086512 |
Target: 5'- cACCGCGcCCGGCgGCC-GCAGGCccugGCg -3' miRNA: 3'- -UGGCGCaGGUCGgUGGuCGUUCGa---CG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 29291 | 0.76 | 0.091624 |
Target: 5'- cGCCGCcuacaacgCCGGCC-CCGGCGcGCUGCa -3' miRNA: 3'- -UGGCGca------GGUCGGuGGUCGUuCGACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 34643 | 0.75 | 0.097023 |
Target: 5'- -gCGCG-CCgaGGCCACgGGCAAGCUGUc -3' miRNA: 3'- ugGCGCaGG--UCGGUGgUCGUUCGACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 15474 | 0.75 | 0.099834 |
Target: 5'- aGCUGcCGUCCAguugcaucGCCACCGGCAGGguUUGCa -3' miRNA: 3'- -UGGC-GCAGGU--------CGGUGGUCGUUC--GACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 29147 | 0.75 | 0.105688 |
Target: 5'- cACCGCGcCCgaGGCCGCCaagcuGGCGGGcCUGCc -3' miRNA: 3'- -UGGCGCaGG--UCGGUGG-----UCGUUC-GACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 14439 | 0.75 | 0.108734 |
Target: 5'- aACgGCGUggucgaUCuGaCCACCGGCAAGCUGCu -3' miRNA: 3'- -UGgCGCA------GGuC-GGUGGUCGUUCGACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 36399 | 0.74 | 0.125237 |
Target: 5'- aGCCGCGcgCC-GUCACCuGCAAacGCUGCg -3' miRNA: 3'- -UGGCGCa-GGuCGGUGGuCGUU--CGACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 24296 | 0.73 | 0.136225 |
Target: 5'- uGCCGUGUCUAuuacaccgucGCCACCGGCccGCUGa -3' miRNA: 3'- -UGGCGCAGGU----------CGGUGGUCGuuCGACg -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 26161 | 0.73 | 0.143636 |
Target: 5'- cGCCGUGUUCAacGCCGCCGGCGAuuaccccGCgGCc -3' miRNA: 3'- -UGGCGCAGGU--CGGUGGUCGUU-------CGaCG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 41981 | 0.73 | 0.144036 |
Target: 5'- cGCCGUGUCCacggcgcugcuGGCCgACCcGCAGGCgGCc -3' miRNA: 3'- -UGGCGCAGG-----------UCGG-UGGuCGUUCGaCG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 20278 | 0.73 | 0.148094 |
Target: 5'- -gCGCGUUCGGCacgGCCAGCAGcaucguGCUGCc -3' miRNA: 3'- ugGCGCAGGUCGg--UGGUCGUU------CGACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 21150 | 0.73 | 0.152254 |
Target: 5'- cGCCGUGUCCGcGCCcugguucaacaGCgCGGCcuGCUGCg -3' miRNA: 3'- -UGGCGCAGGU-CGG-----------UG-GUCGuuCGACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 18832 | 0.72 | 0.160454 |
Target: 5'- aGCCGCGgcgcaUCGGCCcgguggcGCCGGCAuggcGCUGCu -3' miRNA: 3'- -UGGCGCa----GGUCGG-------UGGUCGUu---CGACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 4431 | 0.72 | 0.164475 |
Target: 5'- uGCCGCG-CCagggggaAGCCGCCAGCGguGGCaccgucaUGCa -3' miRNA: 3'- -UGGCGCaGG-------UCGGUGGUCGU--UCG-------ACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 16669 | 0.72 | 0.165381 |
Target: 5'- cGCgGCGaCaugcugGGCCACC-GCAAGCUGCa -3' miRNA: 3'- -UGgCGCaGg-----UCGGUGGuCGUUCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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