Results 21 - 40 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26795 | 5' | -58.9 | NC_005808.1 | + | 22669 | 0.66 | 0.404443 |
Target: 5'- gGCCGacaaggaGUUCGGCgGCgA-CAAGCUGCa -3' miRNA: 3'- -UGGCg------CAGGUCGgUGgUcGUUCGACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 14963 | 0.66 | 0.403515 |
Target: 5'- uGCuCGCGUgaagucgCCGGUCGCCAGaauGGCgucgGCa -3' miRNA: 3'- -UG-GCGCA-------GGUCGGUGGUCgu-UCGa---CG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 32193 | 0.66 | 0.395223 |
Target: 5'- gUgGCGa--GGCCAUCGGCGcGCUGCa -3' miRNA: 3'- uGgCGCaggUCGGUGGUCGUuCGACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 32330 | 0.66 | 0.395223 |
Target: 5'- gGCCgGCGUCCcgacaaccGCCGCCcaGGUc-GCUGCg -3' miRNA: 3'- -UGG-CGCAGGu-------CGGUGG--UCGuuCGACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 29587 | 0.66 | 0.395223 |
Target: 5'- gGCCGCGcCCAGgCGCgCGGUuugccAGUUGUc -3' miRNA: 3'- -UGGCGCaGGUCgGUG-GUCGu----UCGACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 11080 | 0.66 | 0.394308 |
Target: 5'- -aCGUGUCCGggucGCgCGCgAGCAccuugucGGCUGCg -3' miRNA: 3'- ugGCGCAGGU----CG-GUGgUCGU-------UCGACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 33312 | 0.67 | 0.377195 |
Target: 5'- uAUCGCGgcaCGGCCACC-GCuGGCUaucGCg -3' miRNA: 3'- -UGGCGCag-GUCGGUGGuCGuUCGA---CG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 33216 | 0.67 | 0.377195 |
Target: 5'- uAUCGCGgcaCGGCCACC-GCuGGCUaucGCg -3' miRNA: 3'- -UGGCGCag-GUCGGUGGuCGuUCGA---CG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 33264 | 0.67 | 0.377195 |
Target: 5'- uAUCGCGgcaCGGCCACC-GCuGGCUaucGCg -3' miRNA: 3'- -UGGCGCag-GUCGGUGGuCGuUCGA---CG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 33360 | 0.67 | 0.377195 |
Target: 5'- uAUCGCGgcaCGGCCACC-GCuGGCUaucGCg -3' miRNA: 3'- -UGGCGCag-GUCGGUGGuCGuUCGA---CG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 33408 | 0.67 | 0.377195 |
Target: 5'- uAUCGCGgcaCGGCCACC-GCuGGCUaucGCg -3' miRNA: 3'- -UGGCGCag-GUCGGUGGuCGuUCGA---CG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 33504 | 0.67 | 0.377195 |
Target: 5'- uAUCGCGgcaCGGCCACC-GCuGGCUaucGCg -3' miRNA: 3'- -UGGCGCag-GUCGGUGGuCGuUCGA---CG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 33456 | 0.67 | 0.377195 |
Target: 5'- uAUCGCGgcaCGGCCACC-GCuGGCUaucGCg -3' miRNA: 3'- -UGGCGCag-GUCGGUGGuCGuUCGA---CG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 14767 | 0.67 | 0.377195 |
Target: 5'- -gCGCGgCCGgcGCCACC-GCGGGCaGCg -3' miRNA: 3'- ugGCGCaGGU--CGGUGGuCGUUCGaCG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 25662 | 0.67 | 0.376309 |
Target: 5'- uGCCgGCGUCauguacgucauCAGCCGgcggauuUCGGCAAcGCUGCu -3' miRNA: 3'- -UGG-CGCAG-----------GUCGGU-------GGUCGUU-CGACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 14045 | 0.67 | 0.368392 |
Target: 5'- cGCCGCGauggCCGGCgGCC-GCAAGgucgUGCc -3' miRNA: 3'- -UGGCGCa---GGUCGgUGGuCGUUCg---ACG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 29027 | 0.67 | 0.368392 |
Target: 5'- cGCCGCGcUUCGGCCaggucgauacccACCGGC-GGCUcGUa -3' miRNA: 3'- -UGGCGC-AGGUCGG------------UGGUCGuUCGA-CG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 18270 | 0.67 | 0.368392 |
Target: 5'- cGCCGagaacuugCCGGCCGUCAGCGGGCcggugGCg -3' miRNA: 3'- -UGGCgca-----GGUCGGUGGUCGUUCGa----CG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 23833 | 0.67 | 0.35973 |
Target: 5'- -gUGCGgcaCCGGCgugACCAGCAGGCagGCg -3' miRNA: 3'- ugGCGCa--GGUCGg--UGGUCGUUCGa-CG- -5' |
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26795 | 5' | -58.9 | NC_005808.1 | + | 24314 | 0.67 | 0.35973 |
Target: 5'- uCgGCGagCAGCCGCgGGuCAGGCgGCa -3' miRNA: 3'- uGgCGCagGUCGGUGgUC-GUUCGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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