Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26797 | 3' | -60.2 | NC_005808.1 | + | 15166 | 0.66 | 0.361062 |
Target: 5'- -gGGCCUG-CGGCCGccggGCGCGGu -3' miRNA: 3'- ggCUGGACgGCCGGCuugaCGCGCUu -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 15223 | 0.68 | 0.276538 |
Target: 5'- -gGAUUUGCUGGCCGAAUggcuggacgagUGCuGCGAGg -3' miRNA: 3'- ggCUGGACGGCCGGCUUG-----------ACG-CGCUU- -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 16338 | 0.67 | 0.33074 |
Target: 5'- gCCGACCagGCCGGCgggugcccgugccuuCGGcgacgcgcgcaaaACUGCGCGc- -3' miRNA: 3'- -GGCUGGa-CGGCCG---------------GCU-------------UGACGCGCuu -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 16933 | 0.67 | 0.337134 |
Target: 5'- gCCGGCUgaugacguacaugacGCCGGCaGAACUGC-CGAGg -3' miRNA: 3'- -GGCUGGa--------------CGGCCGgCUUGACGcGCUU- -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 18030 | 0.8 | 0.042525 |
Target: 5'- cCCGACCgugGCCGGCCucgccaucgccGcGCUGCGCGAc -3' miRNA: 3'- -GGCUGGa--CGGCCGG-----------CuUGACGCGCUu -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 18653 | 0.66 | 0.395959 |
Target: 5'- gCCGACCUcGCCGGgCG---UGCGCc-- -3' miRNA: 3'- -GGCUGGA-CGGCCgGCuugACGCGcuu -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 19037 | 0.66 | 0.395959 |
Target: 5'- cCCGcACCUGCCGGC-GAugUcgGC-CGAGg -3' miRNA: 3'- -GGC-UGGACGGCCGgCUugA--CGcGCUU- -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 19258 | 0.66 | 0.405017 |
Target: 5'- gCGGCgagGCC-GUCGAAUUGCGCGGc -3' miRNA: 3'- gGCUGga-CGGcCGGCUUGACGCGCUu -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 19295 | 0.68 | 0.305313 |
Target: 5'- cCCGGCCagUGCCGGCCGcaAACaggcauucgugGCGCa-- -3' miRNA: 3'- -GGCUGG--ACGGCCGGC--UUGa----------CGCGcuu -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 20910 | 0.67 | 0.312857 |
Target: 5'- cUCGACCUGUCgcaccuucuGGCUGAcaucguggACgUGCGCGAGc -3' miRNA: 3'- -GGCUGGACGG---------CCGGCU--------UG-ACGCGCUU- -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 21190 | 0.7 | 0.219762 |
Target: 5'- gCGGCCUGCU-GCUGGuCUGCGCGu- -3' miRNA: 3'- gGCUGGACGGcCGGCUuGACGCGCuu -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 21988 | 0.66 | 0.37824 |
Target: 5'- aCCGACCUGCgacGCCGc-CUG-GCGAAg -3' miRNA: 3'- -GGCUGGACGgc-CGGCuuGACgCGCUU- -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 22963 | 0.68 | 0.305313 |
Target: 5'- cCCGAC--GCUGGCCGAugU-CGCGGc -3' miRNA: 3'- -GGCUGgaCGGCCGGCUugAcGCGCUu -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 25511 | 0.69 | 0.24997 |
Target: 5'- cCCGGCCgagaaccgcGCCGGCUucGCcuucgUGCGCGAGg -3' miRNA: 3'- -GGCUGGa--------CGGCCGGcuUG-----ACGCGCUU- -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 26270 | 0.69 | 0.262981 |
Target: 5'- gCCGGCCUgGUCGGCuCGcGCaucgcGCGCGAu -3' miRNA: 3'- -GGCUGGA-CGGCCG-GCuUGa----CGCGCUu -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 28230 | 0.72 | 0.151364 |
Target: 5'- aCGACCacgcGCgGGUCGGACUGCGCc-- -3' miRNA: 3'- gGCUGGa---CGgCCGGCUUGACGCGcuu -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 28556 | 0.67 | 0.320541 |
Target: 5'- gCGGCC-GCCGGCCaucGCgGCGCGc- -3' miRNA: 3'- gGCUGGaCGGCCGGcu-UGaCGCGCuu -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 30631 | 0.72 | 0.147301 |
Target: 5'- gCGACCaGCCGGCgCGAAUgaggGCGCa-- -3' miRNA: 3'- gGCUGGaCGGCCG-GCUUGa---CGCGcuu -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 31012 | 0.68 | 0.276538 |
Target: 5'- gCGGCCaGCCGGCgGccCUGgGCGGc -3' miRNA: 3'- gGCUGGaCGGCCGgCuuGACgCGCUu -5' |
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26797 | 3' | -60.2 | NC_005808.1 | + | 31021 | 0.76 | 0.07962 |
Target: 5'- aCgGGCUUGCCGGCCGAggcaaucgcgcggGCcaacgUGCGCGAAg -3' miRNA: 3'- -GgCUGGACGGCCGGCU-------------UG-----ACGCGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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