miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26798 3' -54.2 NC_005808.1 + 37474 1.12 0.000509
Target:  5'- gCACGUUGCAGUUCAACGGCGCCAGCCg -3'
miRNA:   3'- -GUGCAACGUCAAGUUGCCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 34889 0.84 0.05659
Target:  5'- uGCGcUGCAGUUCAuCGGCaaGCCGGCCg -3'
miRNA:   3'- gUGCaACGUCAAGUuGCCG--CGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 35286 0.79 0.132591
Target:  5'- uGCGUUcGCAGaccaUCGACGGCGCCAuCCg -3'
miRNA:   3'- gUGCAA-CGUCa---AGUUGCCGCGGUcGG- -5'
26798 3' -54.2 NC_005808.1 + 21849 0.78 0.144446
Target:  5'- gCGCGgcGCAGcgCcucuACGGCGCCAGCa -3'
miRNA:   3'- -GUGCaaCGUCaaGu---UGCCGCGGUCGg -5'
26798 3' -54.2 NC_005808.1 + 18459 0.76 0.20767
Target:  5'- gACGgucGCGGcgcCGGCGGCGUCGGCCg -3'
miRNA:   3'- gUGCaa-CGUCaa-GUUGCCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 3811 0.75 0.231473
Target:  5'- -uCGUUGUAGUUgGGCaGGCGCUuGCCg -3'
miRNA:   3'- guGCAACGUCAAgUUG-CCGCGGuCGG- -5'
26798 3' -54.2 NC_005808.1 + 16823 0.75 0.244215
Target:  5'- gGCGgcGCAGUUCAcGCGGCGCaUAGUUc -3'
miRNA:   3'- gUGCaaCGUCAAGU-UGCCGCG-GUCGG- -5'
26798 3' -54.2 NC_005808.1 + 27827 0.74 0.250802
Target:  5'- gCGCGcUGCccg-CggUGGCGCCGGCCg -3'
miRNA:   3'- -GUGCaACGucaaGuuGCCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 12462 0.74 0.271442
Target:  5'- aCGCGgUGCAGgcCGGCGGCGUguucuggcgCGGCCu -3'
miRNA:   3'- -GUGCaACGUCaaGUUGCCGCG---------GUCGG- -5'
26798 3' -54.2 NC_005808.1 + 1851 0.74 0.271442
Target:  5'- gAUGUUGCcgccgucuugcaGGUUCAGCccguggccGGCGCUGGCCg -3'
miRNA:   3'- gUGCAACG------------UCAAGUUG--------CCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 6197 0.74 0.27862
Target:  5'- aGCGuUUGCAGgu-GACGGCGCgCGGCUc -3'
miRNA:   3'- gUGC-AACGUCaagUUGCCGCG-GUCGG- -5'
26798 3' -54.2 NC_005808.1 + 2825 0.73 0.285947
Target:  5'- cCAgGUgcucGCGGccacgcgCAGCGGCGCCAGCa -3'
miRNA:   3'- -GUgCAa---CGUCaa-----GUUGCCGCGGUCGg -5'
26798 3' -54.2 NC_005808.1 + 18088 0.72 0.350042
Target:  5'- gACGUgauCGG--CGugGGCGCCAGCCc -3'
miRNA:   3'- gUGCAac-GUCaaGUugCCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 16569 0.72 0.350042
Target:  5'- gACGUUGUAGcgCGAC-GCGCCggacgaGGCCg -3'
miRNA:   3'- gUGCAACGUCaaGUUGcCGCGG------UCGG- -5'
26798 3' -54.2 NC_005808.1 + 5072 0.71 0.384799
Target:  5'- cCGCGgcagguuUUGCGGUUgGAacaGGCgGCCGGCCc -3'
miRNA:   3'- -GUGC-------AACGUCAAgUUg--CCG-CGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 41599 0.71 0.385719
Target:  5'- gACGcUGCGGUgaaCcACGGCaCCGGCCa -3'
miRNA:   3'- gUGCaACGUCAa--GuUGCCGcGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 15325 0.71 0.389417
Target:  5'- gCGCGgcgaacUGCGGUUCAuugccucggccaagaGCcuggGGCGCCGGCUg -3'
miRNA:   3'- -GUGCa-----ACGUCAAGU---------------UG----CCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 24295 0.71 0.395007
Target:  5'- cCACGUggggGCGGUgagguCGGCGagCAGCCg -3'
miRNA:   3'- -GUGCAa---CGUCAaguu-GCCGCg-GUCGG- -5'
26798 3' -54.2 NC_005808.1 + 28388 0.71 0.395007
Target:  5'- -gUGUUcCAGUUCGacgccggcggcGCGGCGCCAGUa -3'
miRNA:   3'- guGCAAcGUCAAGU-----------UGCCGCGGUCGg -5'
26798 3' -54.2 NC_005808.1 + 33402 0.71 0.395007
Target:  5'- cCGCGccgccgaGCAGgccaacgUCGACGGCGCCAaguugucgcuGCCg -3'
miRNA:   3'- -GUGCaa-----CGUCa------AGUUGCCGCGGU----------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.