miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26798 5' -62.1 NC_005808.1 + 37511 1.08 0.000176
Target:  5'- cUGGGCCGGCCGCCUGUUCCAACCGCAa -3'
miRNA:   3'- -ACCCGGCCGGCGGACAAGGUUGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 36213 0.78 0.041569
Target:  5'- cGGGCCGGCCgGCCUGcgCCugauuGCCGaCGu -3'
miRNA:   3'- aCCCGGCCGG-CGGACaaGGu----UGGC-GU- -5'
26798 5' -62.1 NC_005808.1 + 891 0.75 0.067346
Target:  5'- aGGGCC-GCCGCgUUGUUCCAgaaguugACCGCGc -3'
miRNA:   3'- aCCCGGcCGGCG-GACAAGGU-------UGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 30772 0.73 0.094662
Target:  5'- cGcGGCgCGGCCgGUCUGUUCCAGuCCGUc -3'
miRNA:   3'- aC-CCG-GCCGG-CGGACAAGGUU-GGCGu -5'
26798 5' -62.1 NC_005808.1 + 15165 0.72 0.102911
Target:  5'- aGGGCCugcGGCCGCCgggcgcgGUgcgCCAGgCGCGc -3'
miRNA:   3'- aCCCGG---CCGGCGGa------CAa--GGUUgGCGU- -5'
26798 5' -62.1 NC_005808.1 + 7025 0.71 0.121475
Target:  5'- aUGGGCguuUGuGCCGCCUGUUgCAGCaggCGCAu -3'
miRNA:   3'- -ACCCG---GC-CGGCGGACAAgGUUG---GCGU- -5'
26798 5' -62.1 NC_005808.1 + 18191 0.71 0.131885
Target:  5'- cGGGCCGGCUGCgCUucUUCAACuugCGCAg -3'
miRNA:   3'- aCCCGGCCGGCG-GAcaAGGUUG---GCGU- -5'
26798 5' -62.1 NC_005808.1 + 19745 0.71 0.135534
Target:  5'- uUGGGCUGGuuGCCguUGUUgCCGGCCa-- -3'
miRNA:   3'- -ACCCGGCCggCGG--ACAA-GGUUGGcgu -5'
26798 5' -62.1 NC_005808.1 + 8796 0.7 0.148645
Target:  5'- aUGGGUCGGCCGCgCcggucaguaccgaucUGcugggucgggCCAGCCGCAa -3'
miRNA:   3'- -ACCCGGCCGGCG-G---------------ACaa--------GGUUGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 37444 0.7 0.156887
Target:  5'- aGGGCgugagcagcgaCGGCCGCCUgcgcggcacguugcaGUUcaacggcgCCAGCCGCAc -3'
miRNA:   3'- aCCCG-----------GCCGGCGGA---------------CAA--------GGUUGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 23744 0.7 0.168219
Target:  5'- gUGGGCaugGGCCGCCcgGccUUCUAcauGCCGCGc -3'
miRNA:   3'- -ACCCGg--CCGGCGGa-C--AAGGU---UGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 1712 0.69 0.17277
Target:  5'- gUGGGCCGGCgUGCCggcgagGgcgUCCAAguccUCGCGg -3'
miRNA:   3'- -ACCCGGCCG-GCGGa-----Ca--AGGUU----GGCGU- -5'
26798 5' -62.1 NC_005808.1 + 5523 0.69 0.182201
Target:  5'- aGGacacGCCGGCCGCCcagGUUCC-GCC-CAg -3'
miRNA:   3'- aCC----CGGCCGGCGGa--CAAGGuUGGcGU- -5'
26798 5' -62.1 NC_005808.1 + 9489 0.69 0.187086
Target:  5'- cGGGCgucauGCCaGCCUGUUCC-GCCGUg -3'
miRNA:   3'- aCCCGgc---CGG-CGGACAAGGuUGGCGu -5'
26798 5' -62.1 NC_005808.1 + 21745 0.69 0.192085
Target:  5'- uUGGGCgCGGCCGCg---UCCAcauaggacagGCCGCc -3'
miRNA:   3'- -ACCCG-GCCGGCGgacaAGGU----------UGGCGu -5'
26798 5' -62.1 NC_005808.1 + 12471 0.68 0.202436
Target:  5'- -aGGCCGGCgGCgUGUUCUGG-CGCGg -3'
miRNA:   3'- acCCGGCCGgCGgACAAGGUUgGCGU- -5'
26798 5' -62.1 NC_005808.1 + 17304 0.68 0.213268
Target:  5'- aGGGCCGGCCGCa-----CGACCuCAa -3'
miRNA:   3'- aCCCGGCCGGCGgacaagGUUGGcGU- -5'
26798 5' -62.1 NC_005808.1 + 1762 0.68 0.213268
Target:  5'- -uGGCCGGCCugcGCCUGgcgcgUCgGGCCGa- -3'
miRNA:   3'- acCCGGCCGG---CGGACa----AGgUUGGCgu -5'
26798 5' -62.1 NC_005808.1 + 4173 0.68 0.224016
Target:  5'- cUGGuaGCCGGCCGCCucgauggcgggcaUGUU--GGCCGCGa -3'
miRNA:   3'- -ACC--CGGCCGGCGG-------------ACAAggUUGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 8036 0.68 0.224594
Target:  5'- aGGGCCGccguccuuGCCGCCg--UCCAugaCGCGc -3'
miRNA:   3'- aCCCGGC--------CGGCGGacaAGGUug-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.